Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5225
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   6.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   8.7  

>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = +1

Query: 109 EDMIKGILKFSTILNAFTDIM--------AFEFLRLSN*SVRKFYYDFPSQLKVECSL-K 261
           ED I+ +LK S +     DI         AF+ LRL + S R+FYY        EC    
Sbjct: 32  EDPIQPVLKNSNLFLLNRDIWSLIINYLDAFDILRLMH-SSRQFYYWLRKSAVDECCFNN 90

Query: 262 NYLN 273
           N+LN
Sbjct: 91  NFLN 94


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 292 SSCSDFRSSNFLNCTLPLVDSENHNRI 212
           +SCSDF +S+ + C  PL  S  +NRI
Sbjct: 18  TSCSDFSTSSPVPCLNPL--SHENNRI 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,806
Number of Sequences: 5004
Number of extensions: 57062
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)