Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5225
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248     35   0.079
07_03_1176 + 24567720-24570932                                         29   3.0  
09_06_0231 + 21733151-21734905                                         29   3.9  
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685...    29   3.9  
01_06_0325 - 28488446-28489369                                         29   5.2  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    28   6.9  

>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
          Length = 496

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 163 DIMAFEFLRLSN*SVRKFYYDFPSQLKVECSLKNYLNESRNRTTNVDLNETLKCCDI-AT 339
           DI+ F FL+L    + K Y+ F  + K +C +    ++S     ++ +++  K CDI A 
Sbjct: 432 DIVLFYFLQLDEWVLCKLYHSFAYKQKGKCKVHEEGSKSDRGVQDLSIDDDRKTCDIEAN 491

Query: 340 LPNNL 354
            PN +
Sbjct: 492 KPNGV 496


>07_03_1176 + 24567720-24570932
          Length = 1070

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 172 AFEFLRLSN*SVRKFYYDFPSQLKVECSLKNYLNESRNRTTN-VDLNETLKCCDIATLPN 348
           A + L + N     F    P+ L VECS   +LN S N+ T  +D + T+ C D+  +  
Sbjct: 335 ACQSLEMINLGENLFSGGIPNGL-VECSHLKFLNLSSNKLTGAIDPSLTVPCMDVFDVSG 393

Query: 349 N 351
           N
Sbjct: 394 N 394


>09_06_0231 + 21733151-21734905
          Length = 584

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 505 LNRGFSRGCDTLYS-KMFVQFGNILQF 582
           LN  F+ G DT+Y+ +MF  FG +L F
Sbjct: 517 LNAAFAAGADTVYAVEMFRVFGKVLDF 543


>05_02_0125 -
           6852470-6852481,6852641-6853086,6853178-6853781,
           6853970-6854187,6854283-6854437,6854561-6854772
          Length = 548

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
 Frame = +1

Query: 1   VTSIPYLPLSCCLRISWVTAHH*VDSDSYLLRFSRVEDMIKGILKFSTILNAFTDIM--A 174
           VT +P LP   CL +S  T H   + +  +L    +E +I     F  I   F+ I+  +
Sbjct: 234 VTCLPILPTLRCLNMSNCTIHSICNGEFQVL--IHLEKLIISAASFGNIDEVFSSILPSS 291

Query: 175 FEFLRLSN*SVRKFYY--DFPSQLKVECSLKNYLNESRNRTTNVDLN 309
             +L +S+ S    Y+  +  +   ++ S    ++++     N+ +N
Sbjct: 292 LTYLDMSSCSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMN 338


>01_06_0325 - 28488446-28489369
          Length = 307

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 710 FS*AD---QYSGKRTPHLVDIGFFAHYPPSPSSMQGLT*FENETKVNCKIFPN 561
           FS AD   QY+G R    +   F  +  P P    GLT F ++ ++NCK F N
Sbjct: 129 FSQADEWLQYTGPRDN--LTFFFGCNLVPLPPMDPGLTRFVDKNQINCKDFSN 179


>08_02_0076 +
           11967606-11967905,11969125-11969223,11969813-11974124,
           11974177-11974211
          Length = 1581

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 638 PPSPSSMQGLT*FENETKVNCKIFPNCTNILEYSVSQPRLKPRFNVTFII 489
           PP    +  +T +E +TK+N  ++PN + + E+S S   L+ R   T ++
Sbjct: 612 PPCVRHVSVITEWEYKTKLNGTVYPNDSFLQEFSNSFRELQQRSLSTLML 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,473
Number of Sequences: 37544
Number of extensions: 310607
Number of successful extensions: 538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)