Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5224
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   1.2  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   6.1  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    24   8.1  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 IRTYSSTKWRRFTRFCSQMILFNFSLFHENMIKIYL-FSILIR 286
           ++ YSST+        S+++L+ F+ F EN++K+ +  SI +R
Sbjct: 422 VQLYSSTESDLLKEGLSRILLYFFTYFPENILKLKIDTSIFLR 464


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 227 NFSLFHENMIKIYLFSILIRFFSMKCFKKIGFEPIL 334
           NF + HE++     + IL +F    CF     + +L
Sbjct: 71  NFEIIHESLRFTVFYQILSQFMQNICFHDFTIQDLL 106


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 197 TRFCSQMILFNFSLFHENMIK 259
           ++FC+ M+L+ FS F   +IK
Sbjct: 295 SQFCADMVLYGFSSFLPVIIK 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,185
Number of Sequences: 5004
Number of extensions: 24616
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)