Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5224
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0276 - 16306894-16307526,16307556-16308572                       27   4.5  
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237...    27   5.9  

>09_04_0276 - 16306894-16307526,16307556-16308572
          Length = 549

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 413 WNHFQIHLWNPSGAFW*LFKKFTVTRIILAQ 321
           +N+  I LW+P GA+W   +K  VT +  A+
Sbjct: 114 YNYTDI-LWSPYGAYWRQARKMCVTELFSAR 143


>06_03_1309 +
           29223197-29223240,29223358-29223592,29223695-29223783,
           29223870-29223968,29224065-29224158,29224297-29224514,
           29224861-29224967,29225298-29225472,29225596-29225743,
           29226548-29226596,29228016-29228162,29229990-29229996,
           29230417-29230482,29230773-29231991,29232073-29233149,
           29233226-29233355,29233519-29233617,29233817-29233878,
           29234429-29234533
          Length = 1389

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 223 QNHLAAKSCEATPFCRRVSSDDYKNE 146
           Q   A  SCE    CR+  S+D+KNE
Sbjct: 117 QAQAAHTSCEDPQSCRQQISEDFKNE 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,280,020
Number of Sequences: 37544
Number of extensions: 116975
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)