Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5223
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 204 GSYLNLFLVMVII*KEVQNNRQYYPRV*NTYLFDVT-NLCTKEC 332
           GS++  ++  VI  +E +   + Y     TYLFD+  N   ++C
Sbjct: 519 GSFVTQYVGEVITNEEAEKRGKEYDAAGRTYLFDLDYNESEEQC 562


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 119 WICNFLYVIFIVNNQDSVSC 60
           WIC    V  +V+ Q++V C
Sbjct: 169 WICQRERVASVVHRQETVDC 188


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 554 HLIIYVEHSYNQ*PEREIERV 492
           H ++Y ++ Y Q  E +++R+
Sbjct: 340 HRLVYFQNEYEQPSEEDLKRI 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,323
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)