Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5215
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   3.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   3.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   4.8  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   6.3  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    24   8.4  

>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 273 KVFYSCSKLTNLFAEKKKRNMSNDFKI 193
           + ++  SK  NLF EK  ++  ND K+
Sbjct: 352 ETYHQLSKWDNLFVEKTAQSTENDEKV 378


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 155 TSNTREEVSREHNILKSFDIFRFFFSAKRL 244
           T+ TR+ ++  +N+ K  +IF F    KR+
Sbjct: 506 TNRTRDAITLNNNVYKILNIFPFKSETKRM 535


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 149 FNTSNTREEVSREHNILKSFDIFRFFFSAKRLVSF--EQE*NTLFH 280
           FN+S  R E+S EH  ++ F + R     +  + +  E + +T FH
Sbjct: 491 FNSSTNRFELSIEHEQIEPFALLR--LKCRDFIKYIEEDQADTFFH 534


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 231 LQKDWSVSNKNKIPYFIGLDLED 299
           L K WS  +  K+ +F+G D+ D
Sbjct: 162 LSKHWSAKDTFKVDHFLGEDMID 184


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 273 KVFYSCSKLTNLFAEKKKRNMSNDFKILC 187
           K+FY+  +L +  A   K  + N  KILC
Sbjct: 46  KLFYAGKRLKDKKASLSKLGLKNHSKILC 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,713
Number of Sequences: 5004
Number of extensions: 33826
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)