Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5215
(419 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF217994-1|AAG17236.1| 353|Homo sapiens unknown protein. 33 0.51
X99975-1|CAA68236.1| 480|Homo sapiens hRTR/hGCNF protein protein. 29 6.3
U80802-1|AAB96828.1| 480|Homo sapiens orphan nuclear receptor G... 29 6.3
S83309-1|AAB50876.1| 476|Homo sapiens germ cell nuclear factor ... 29 6.3
BC030600-1|AAH30600.1| 475|Homo sapiens nuclear receptor subfam... 29 6.3
AL354979-4|CAI10960.1| 479|Homo sapiens nuclear receptor subfam... 29 6.3
AL354928-2|CAI39633.1| 479|Homo sapiens nuclear receptor subfam... 29 6.3
AL158075-1|CAI13577.1| 479|Homo sapiens nuclear receptor subfam... 29 6.3
AF004291-1|AAC52054.1| 454|Homo sapiens germ cell nuclear facto... 29 6.3
>AF217994-1|AAG17236.1| 353|Homo sapiens unknown protein.
Length = 353
Score = 32.7 bits (71), Expect = 0.51
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 359 KKKKKNSRGGPVPNS 403
KKKKKNSRGGPVP +
Sbjct: 46 KKKKKNSRGGPVPGN 60
>X99975-1|CAA68236.1| 480|Homo sapiens hRTR/hGCNF protein protein.
Length = 480
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 63 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 118
>U80802-1|AAB96828.1| 480|Homo sapiens orphan nuclear receptor GCNF
protein.
Length = 480
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 63 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 118
>S83309-1|AAB50876.1| 476|Homo sapiens germ cell nuclear factor
protein.
Length = 476
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 59 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 114
>BC030600-1|AAH30600.1| 475|Homo sapiens nuclear receptor subfamily
6, group A, member 1 protein.
Length = 475
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 59 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 114
>AL354979-4|CAI10960.1| 479|Homo sapiens nuclear receptor subfamily
6, group A, member 1 protein.
Length = 479
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 63 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 118
>AL354928-2|CAI39633.1| 479|Homo sapiens nuclear receptor subfamily
6, group A, member 1 protein.
Length = 479
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 63 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 118
>AL158075-1|CAI13577.1| 479|Homo sapiens nuclear receptor subfamily
6, group A, member 1 protein.
Length = 479
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 63 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 118
>AF004291-1|AAC52054.1| 454|Homo sapiens germ cell nuclear factor
protein.
Length = 454
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 354 CGPRRGMLHPNLV-CD*IRSLQGLNL*NKVFYSCSKLTNLFAEKKKRNMSNDFKIL 190
CG R LH ++ C+ + ++ NK Y CS+ N +K+RN ++L
Sbjct: 37 CGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLL 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,629,115
Number of Sequences: 237096
Number of extensions: 1116846
Number of successful extensions: 1720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -