Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5215
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    30   0.77 
AL132862-8|CAB60538.2|  284|Caenorhabditis elegans Hypothetical ...    29   1.8  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   2.4  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   2.4  
U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical ...    27   5.5  

>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 28  FLMLPTYEIKNPRLLVKKNIYTRKIKQISLN 120
           FL+ P   + N   +VKKN +++ +KQ+  N
Sbjct: 479 FLLFPFLSLHNHNFVVKKNYFSQIVKQLEFN 509


>AL132862-8|CAB60538.2|  284|Caenorhabditis elegans Hypothetical
           protein Y73F8A.13 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 219 VFFFLQKDWSVSNKNKIPYFIGLDLEDFESNRI 317
           ++FFLQ D      ++IP+F+ + +E   S  I
Sbjct: 67  LYFFLQMDMKQEEYDEIPFFVQVKMESTSSQEI 99


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 409 IGRIGYRAPPRVFFFFFLL 353
           IG  G+ APP VF FFF L
Sbjct: 348 IGAFGHEAPPLVFKFFFWL 366


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 409 IGRIGYRAPPRVFFFFFLL 353
           IG  G+ APP VF FFF L
Sbjct: 346 IGAFGHEAPPLVFKFFFWL 364


>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 165 HGRKCPE-SIIF*SHSTYFVFFFLQKDWSVSNKNKIPYFIGLDLE 296
           H R+C   S +   +   F +  L +DW++SNK +   F+  DL+
Sbjct: 474 HNRRCKHWSAVSVKYPFEFKWDELSQDWNLSNKPRSEAFVCRDLQ 518


>AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical
           protein T06D4.3 protein.
          Length = 743

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 146 FFNTSNTREEVSREHNILKSFDIFRFFFSAKRLVSFEQE 262
           F N  N+++E   + +  + F +   FFS KR ++F+ E
Sbjct: 332 FINPKNSKKEQMLKSSPTERFHLNILFFSVKREINFQLE 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,123
Number of Sequences: 27780
Number of extensions: 188181
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)