Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5214
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    31   0.67 
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U00056-2|AAN65309.2|  187|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = +1

Query: 319 QVDTFSTCPLYMMVLLSSTTHIQSKNLK*INKFSGA--------IRIRHFISNILLFCY 471
           Q +  +T  L +MV+L +T H  +  LK IN  S          IR+ H ISN+LL  Y
Sbjct: 368 QKEKRTTTMLLVMVILYATCHFFNTTLKFINMVSKTYAQFRFPVIRVIHHISNLLLVIY 426


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 41  GVENKIIIVYKLTIPINYSRISTTAGPLVKINTLLRF*YCIFL 169
           G+   I I++ LTI    +R++T   PL+ I T+  F  C FL
Sbjct: 194 GIAYSIFIIW-LTISFVQNRVNTRTTPLIYIPTVFAFLICHFL 235


>Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical
           protein T21B4.9 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +1

Query: 316 LQVDTFSTCPLYMMVLLSSTTHIQSKNLK*INKFSGAIRIRHFISNILL 462
           LQV  FS+C +Y + +  +T  +Q++  + I  F G I I+ FI  +L+
Sbjct: 223 LQVIFFSSCCIYYLCISKTTISLQTRQYQ-IRSFIGLI-IQTFIPILLV 269


>U00056-2|AAN65309.2|  187|Caenorhabditis elegans Hypothetical
           protein R05H11.2 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 345 LIHDGTPFFYHSYSKQK 395
           ++HDG  +FYH Y ++K
Sbjct: 45  IVHDGDTYFYHPYRQRK 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,380,780
Number of Sequences: 27780
Number of extensions: 222560
Number of successful extensions: 415
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)