Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5211
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 89 4e-19
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 28 1.00
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.3
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 28 1.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.7
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 3.0
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 4.0
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 5.3
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 5.3
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.3
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.3
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 89.4 bits (212), Expect = 4e-19
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 1/186 (0%)
Frame = +1
Query: 13 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 189
MAPP YA + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L +
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58
Query: 190 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 369
F K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 59 SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118
Query: 370 DTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFAL 549
+ + +++ + D + ++G+LAG +D QK S +GY + ++
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSV 176
Query: 550 HTNVDN 567
N
Sbjct: 177 ALQASN 182
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 28.3 bits (60), Expect = 1.00
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 469 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFRRVQSTR 600
H Q A F+K++ LGY+ AL++ DN + T+
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTK 207
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +1
Query: 100 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 279
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 280 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 429
A L G PQ T F+ ++ T+LD +L PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 489 KSKVLQEQLCSRLPIW*LCSPHKRRQW*RFSAGSIYQKVSDKLDCGVSMK 638
++K ++ Q+ L LCS H+ ++W + YQ + D +D V+ K
Sbjct: 47 RNKEVKNQMNDWLAYGYLCSVHEAKKWLEEETNNEYQNLDDFVDALVNGK 96
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 298 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 402
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 109 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 258
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 156 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 49
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 107 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 199
P L + P + P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 631 LTPQSSLSDTFW*IEPAENLYHCLRLCG 548
L + S +++W + A+N +HC+ L G
Sbjct: 656 LERRKSRQESYWPVTVADNQFHCILLKG 683
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 247 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 345
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 133 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 258
T+G + +G V G LS + + F EK++ + LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 497 FAFCVSNWVCTPASQPW*FSTAATSTTG 414
F F S+W P +PW FST A G
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDG 1702
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,906
Number of Sequences: 5004
Number of extensions: 51412
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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