Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5210
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   1.5  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    26   2.5  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   5.9  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   7.8  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = -3

Query: 381  F*SKSIHGFY*AEVHFTRHYSALENSFGYSCFVFRIWT*HVLIMLPKNFSCVSITKIHPI 202
            F  K+I  F       ++  +  EN  G SCFV RIW      MLP+    + +  I+P 
Sbjct: 871  FWRKNIRSFGIIPKSLSQEMNNDEND-GKSCFVLRIWN-----MLPETGVPILVADINPQ 924

Query: 201  NLKSLQNSLHTII 163
               S  N    +I
Sbjct: 925  MTSSSSNETSHLI 937


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 264 HVLIMLPKNFSCVSITKIHPINLKSLQNSLH 172
           +V+ ++PK FSC + T+I  +N  +L  + H
Sbjct: 207 YVVTIVPKIFSCSNTTEIKNLNNLNLTTNSH 237


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 264 HVLIMLPKNFSCVSITKIHPINLKSLQNSLHTIIF 160
           H+ +   K++ C+S T +  I+     N LH ++F
Sbjct: 443 HIYVKSSKSWRCMSQTHVSSISNLVWLNELHQLLF 477


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 185 RIVSTRSFLSRSVVRTSVIFAKIKVQFQFYMMFLIADFLN 66
           RI+S  S   +S+V  S+I   IK    FY    I   LN
Sbjct: 195 RIISKCSLKLKSMVLVSMIIPSIKQTLDFYSGSQILRLLN 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,128
Number of Sequences: 5004
Number of extensions: 36637
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)