Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5210
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1569 - 34486005-34486303,34486386-34486928,34487382-344877...    29   1.9  
02_03_0159 + 15822965-15823284,15823314-15823946,15824016-158241...    29   2.5  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   3.3  
03_02_0136 + 5828645-5828669,5829207-5829282,5829634-5829913,583...    27   5.8  
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653...    27   7.7  
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672...    27   7.7  

>04_04_1569 -
           34486005-34486303,34486386-34486928,34487382-34487766,
           34488450-34488650,34488739-34488951,34489210-34489446
          Length = 625

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 205 WMNLRDADTGKILWQHNEDMSSP 273
           W+ + D D+  + W+  EDMS+P
Sbjct: 148 WVQVGDGDSDHLCWERAEDMSTP 170


>02_03_0159 +
           15822965-15823284,15823314-15823946,15824016-15824161,
           15824354-15824875,15825169-15825275
          Length = 575

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 SFLSRSVVR--TSVIFAKIKVQFQFYMMFLIADFLNSELNCVYFCCLTKYSKQLSV 6
           S + + V R  T  IF K+K +    M + + DF++ +    Y  CL + +++L +
Sbjct: 369 SLIEKEVARIYTPAIFKKVKFEIIKSMDWEVIDFIDEDTVVKYVMCLKENNEKLKI 424


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +1

Query: 55   FSSLLRKSAIKNII*NWNCTFIFANMTDVLTTERDK--NDRVETILKGFQINWMNLRDAD 228
            F S    S+ +  I ++N T +  N TD+  T++DK  + ++E I + F +N ++   A+
Sbjct: 4828 FRSSESNSSSRTCISSYNDTKMEYNFTDMTVTKKDKKLHQKLELITEKF-LNLLSRMGAN 4886

Query: 229  TGKILWQHNEDMSS 270
            T      H+   SS
Sbjct: 4887 TMDFNLDHHHHKSS 4900


>03_02_0136 +
           5828645-5828669,5829207-5829282,5829634-5829913,
           5830372-5830462,5830541-5830665,5830742-5830839,
           5830948-5831047
          Length = 264

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/51 (23%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 235 KILWQHNEDMSSP-DAEHEARVPKRILKCRVVSREMNFSSIESMDRFRLEQ 384
           K++W+ N+ M++P D++ ++ VP R  + + V       SI+ ++ + +++
Sbjct: 26  KLMWK-NDSMTNPFDSDSDSEVPSRPSRAQSVPVRRTDQSIQELEDYAVDK 75


>11_01_0780 -
           6531579-6531608,6531732-6532064,6533219-6533325,
           6534267-6534316,6535110-6537065,6537458-6538209
          Length = 1075

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 296 TLASCSASGLDMSSLCCQRIFPVSAS 219
           T+ SCS SG D+ S  C RI    AS
Sbjct: 88  TMDSCSNSGADLESFDCGRIGEFGAS 113


>02_05_0969 +
           33165396-33165935,33166352-33166883,33166988-33167242,
           33167515-33167606,33167745-33167942,33168049-33168240,
           33168341-33168562,33168858-33169024,33169117-33169210,
           33169308-33169364,33169459-33169587,33169681-33169752,
           33170180-33170293,33170419-33170580,33170666-33170794,
           33171057-33171158,33171266-33171342,33171470-33171592,
           33171666-33172227
          Length = 1272

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 335 SRDTTLHLRILLGTLASCSASGLDMSSLCCQRI 237
           +RDT++H R L   L     + LD+  + C  I
Sbjct: 570 ARDTSIHFRALQNVLCDTLKNQLDLRGIICSSI 602


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,443
Number of Sequences: 37544
Number of extensions: 194136
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)