Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5210
(473 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14635-12|AAC46655.1| 159|Caenorhabditis elegans Phosphodiester... 134 2e-32
AC024810-5|AAF60763.1| 507|Caenorhabditis elegans Hypothetical ... 31 0.56
Z73428-1|CAA97807.1| 219|Caenorhabditis elegans Hypothetical pr... 29 1.7
U32854-1|AAC46919.1| 219|Caenorhabditis elegans unc-119 protein. 29 1.7
U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 29 2.3
U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 29 2.3
U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF067943-9|AAC17667.1| 348|Caenorhabditis elegans Seven tm rece... 27 5.2
AF024503-13|AAG24083.1| 347|Caenorhabditis elegans Hypothetical... 27 5.2
U29381-7|AAA68755.1| 225|Caenorhabditis elegans Hypothetical pr... 27 9.1
U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical p... 27 9.1
AC024805-12|AAK39343.1| 557|Caenorhabditis elegans Hypothetical... 27 9.1
>U14635-12|AAC46655.1| 159|Caenorhabditis elegans Phosphodiesterase
delta-like protein1 protein.
Length = 159
Score = 134 bits (325), Expect = 2e-32
Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
Frame = +1
Query: 130 MTDVLTTERDK--NDRVETILKGFQINWMNLRDADTGKILWQHNEDMSSPDAEHEARVPK 303
M T +D +++ E+IL GF++NWMNLRDA+TGK+LWQ EDM+ P EH+A VPK
Sbjct: 1 MATTATRHQDSKLSEKAESILAGFKLNWMNLRDAETGKVLWQSTEDMADPKREHKAHVPK 60
Query: 304 RILKCRVVSREMNFSSIESMDRFRLEQKVLFKGRCLEEWFFDFWLCDPE 450
+LKCR VSRE+NF+S +++FRLEQ+V KG +EEW+FDF P+
Sbjct: 61 NLLKCRTVSREINFTSSVKIEKFRLEQRVYLKGTIIEEWYFDFGFVIPD 109
Score = 33.9 bits (74), Expect = 0.060
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 398 KGDV*KSGFSIFGYVIPNSTNTWQS 472
KG + + + FG+VIP+STNTWQ+
Sbjct: 92 KGTIIEEWYFDFGFVIPDSTNTWQN 116
>AC024810-5|AAF60763.1| 507|Caenorhabditis elegans Hypothetical
protein Y54E10A.6 protein.
Length = 507
Score = 30.7 bits (66), Expect = 0.56
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 204 INLKSLQN-SLHTIIFISFSC*NVSHICENKSAIPILYDVFDC 79
+NL SL SLH + SC N+ H+ K+ + L DVFDC
Sbjct: 47 LNLLSLTGCSLHNLSSSIRSCSNLMHLVLPKNDLKQLPDVFDC 89
>Z73428-1|CAA97807.1| 219|Caenorhabditis elegans Hypothetical
protein M142.1 protein.
Length = 219
Score = 29.1 bits (62), Expect = 1.7
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Frame = +1
Query: 214 LRDADTGKILWQ----HNEDMSSPDAEHEA------RVPKRILKCRVVSREMNFSSIE-S 360
+RD DT +L++ NE + A+ E+ R LK + V + F +
Sbjct: 77 IRDLDTEHVLFEIAKPENETEENLQAQAESARYVRYRFAPNFLKLKTVGATVEFKVGDVP 136
Query: 361 MDRFRLEQKVLFKGRCLEEWFFDFWLCDP 447
+ FR+ ++ FK R L+ + F+F C P
Sbjct: 137 ITHFRMIERHFFKDRLLKCFDFEFGFCMP 165
>U32854-1|AAC46919.1| 219|Caenorhabditis elegans unc-119 protein.
Length = 219
Score = 29.1 bits (62), Expect = 1.7
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Frame = +1
Query: 214 LRDADTGKILWQ----HNEDMSSPDAEHEA------RVPKRILKCRVVSREMNFSSIE-S 360
+RD DT +L++ NE + A+ E+ R LK + V + F +
Sbjct: 77 IRDLDTEHVLFEIAKPENETEENLQAQAESARYVRYRFAPNFLKLKTVGATVEFKVGDVP 136
Query: 361 MDRFRLEQKVLFKGRCLEEWFFDFWLCDP 447
+ FR+ ++ FK R L+ + F+F C P
Sbjct: 137 ITHFRMIERHFFKDRLLKCFDFEFGFCMP 165
>U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical
protein R57.1b protein.
Length = 576
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 232 GKILWQHNEDMSSPDAEHEARVPKRI-LKCRVVSR-EMNFSSIESMDRFRLEQKVLFKGR 405
G IL+ +D++ E E PK+I + V R + +++ + +K LFKGR
Sbjct: 212 GAILFSDTQDVAQDGVESENVYPKKIWMPNEGVQRGSLMHGDGDALSPYYPSKKELFKGR 271
Query: 406 CLEE 417
+EE
Sbjct: 272 TIEE 275
>U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical
protein R57.1c protein.
Length = 751
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 232 GKILWQHNEDMSSPDAEHEARVPKRI-LKCRVVSR-EMNFSSIESMDRFRLEQKVLFKGR 405
G IL+ +D++ E E PK+I + V R + +++ + +K LFKGR
Sbjct: 212 GAILFSDTQDVAQDGVESENVYPKKIWMPNEGVQRGSLMHGDGDALSPYYPSKKELFKGR 271
Query: 406 CLEE 417
+EE
Sbjct: 272 TIEE 275
>U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical
protein R57.1a protein.
Length = 770
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 232 GKILWQHNEDMSSPDAEHEARVPKRI-LKCRVVSR-EMNFSSIESMDRFRLEQKVLFKGR 405
G IL+ +D++ E E PK+I + V R + +++ + +K LFKGR
Sbjct: 231 GAILFSDTQDVAQDGVESENVYPKKIWMPNEGVQRGSLMHGDGDALSPYYPSKKELFKGR 290
Query: 406 CLEE 417
+EE
Sbjct: 291 TIEE 294
>AF067943-9|AAC17667.1| 348|Caenorhabditis elegans Seven tm
receptor protein 114 protein.
Length = 348
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 101 FYMMFLIADFLNSELNCVYFCCLTKYSKQLSV 6
F ++F+I F NS N +Y C TK + SV
Sbjct: 299 FVILFIIKGFRNSIRNVIYRCTKTKKASVSSV 330
>AF024503-13|AAG24083.1| 347|Caenorhabditis elegans Hypothetical
protein F31F4.15 protein.
Length = 347
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 172 VETILKGFQINWMNLRDADTGKILWQHNED 261
V LK FQIN+ N+ D+D+ + ++++D
Sbjct: 38 VSISLKDFQINFRNMSDSDSDSSVEENSQD 67
>U29381-7|AAA68755.1| 225|Caenorhabditis elegans Hypothetical
protein F35D11.9 protein.
Length = 225
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 NMTDVLTTERDKNDRVETILKGFQINWMNLRDADTGK-ILWQHNEDMSSPDAEHEARVPK 303
N T V T KN+ + G N ++ + D + + HN +S+P+ HE +
Sbjct: 24 NFTFVKRTLTFKNNFTKGWCLGI-FNGTDVGNRDRARSVCLYHNASLSNPENSHELEIVS 82
Query: 304 RILKCRVVS 330
+++ R +S
Sbjct: 83 DVIRARNIS 91
>U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical
protein F37A4.9 protein.
Length = 418
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 268 SPDAEHEARV-PKRILKCRVVSREMNFSSIESMDRFRLE 381
SP + E R P + CR V E +F++ S++RF ++
Sbjct: 20 SPSGKSEKRKSPSIVSGCRTVMNERSFTNYWSVERFTVQ 58
>AC024805-12|AAK39343.1| 557|Caenorhabditis elegans Hypothetical
protein Y51H7C.12 protein.
Length = 557
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 258 LIMLPKNFSCVSITKIHPINLKSLQNSLHTIIFISFSC*NVSHICENKSAIP-ILYDV 88
LI++ + + V + H NL+ + NSL ++ ISF + S + + IP +L+D+
Sbjct: 253 LILVSYDSTNVDVVLNHVCNLQFIPNSLSRLVAISFDPNSHSVLKQKHPNIPNLLFDL 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,117,423
Number of Sequences: 27780
Number of extensions: 198724
Number of successful extensions: 502
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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