Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5210
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.72 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   2.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 75  ISNQKHHIKLELHFYFRK 128
           + NQK H +  L FYFRK
Sbjct: 1   MENQKEHYRHILLFYFRK 18


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 294 SCFVFRIWT*HVLIMLPKNFSCVSITKIHPIN 199
           +C+V +IWT H L      F+ + + ++ P N
Sbjct: 55  NCWVTQIWTDHHLKWNASEFAGIRVIRV-PYN 85


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 136 DVLTTERDKNDRV 174
           D+LTTE+D N+ V
Sbjct: 409 DLLTTEKDNNEIV 421


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 119 IKVQFQFYMMFLIADFLNSELNCVYFCCL 33
           IKVQ++     ++ + L  E+ CV    L
Sbjct: 263 IKVQYELAKHGIVIEELGGEIQCVKISAL 291


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = -3

Query: 291 CFVFRIWT*HVLIMLPKNFSCVSITKIHPINL 196
           CF+FR W   ++ M+    +C ++  +  +++
Sbjct: 303 CFLFRAWESIIVGMIGAFITCFTMPLLDKMHI 334


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 261 VLIMLPKNFSCVSITKIHP 205
           V++   KN   V++TK+HP
Sbjct: 509 VMMNFSKNPVTVNLTKLHP 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,387
Number of Sequences: 438
Number of extensions: 2221
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)