Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5207
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   2.4  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    29   5.4  
03_01_0296 + 2284385-2285629,2287632-2288594                           29   5.4  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 196 FISRMNPYSPELNYFLSYQYCR 261
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 460 APAQHADDSMDPLDVPQGSTAPQRTARH 543
           AP++HA  S  P   P  ++AP  + RH
Sbjct: 79  APSRHATPSSSPPSTPSSASAPPPSGRH 106


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 654 RVCSHMKSLISPAVLRLPVEGRSFERDAAISHDVFRPMSGGALWSSASL 508
           R CS++  L+S   LR+ VE ++     A++   F   S   LWSS+ L
Sbjct: 9   RHCSNVDGLVSVEALRIIVETKACFVAVALALAYFLTASRHRLWSSSHL 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,498,472
Number of Sequences: 37544
Number of extensions: 487179
Number of successful extensions: 1164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)