Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5206
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   5.0  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   6.5  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   6.5  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   6.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   6.5  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   8.7  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 15  YNRLR*MYRSWNRK*LRLDYSQVRLAF--FSLYVYIYTLYFDAH 140
           +++LR  + +W R+  R  +SQ   AF   +L+V +Y++  + H
Sbjct: 24  WHKLRNYHGAWYRRISRRRFSQFIFAFGLMTLFVLVYSISSNLH 67


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 578 ISVYVISNCSA*RRKEMKGLKCPS 507
           I +++IS+C     KE++  KCPS
Sbjct: 274 ILLFIISDCCIHSLKEIQPFKCPS 297


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 263 DRSILVGVPPVPTQSPHPEILTMT*RSASDIKNYNVL 153
           +RS+   +  +P Q P PE +T++  SA  ++N + L
Sbjct: 65  ERSVTSRLVRLPAQDPPPEQVTLSPESAKLLRNAHEL 101


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 417 NTYNPNLHIYKKHGRPDPYQEPREHNRETNQP*FYSNFEDNTQM 286
           N  NP   +Y+K+   DP   P + + +     FYS+  D  ++
Sbjct: 124 NGGNPYSRLYRKNPSSDPNDIPPQFHFKKKSKSFYSSMYDKMKI 167


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 405 PNLHIYKKHGRPDPYQEPREHNRETNQ 325
           PNL+  K+H R    +  R HN++TN+
Sbjct: 6   PNLN-NKEHNRASEKKNSRTHNKKTNR 31


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 315 YSNFEDNTQMEQKELVVRSKHFGRGPACANSISAPRNSYND 193
           + + + N    Q EL+V    FG       S S+ ++ YND
Sbjct: 237 FQSMKGNLNTAQGELIVAGHSFGAATCAFISGSSTKSLYND 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,905
Number of Sequences: 5004
Number of extensions: 50189
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)