Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5206
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703...    31   0.94 
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646...    30   1.6  
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936...    28   5.0  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   8.8  
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272...    27   8.8  
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409...    27   8.8  
08_02_0116 + 12762009-12763021,12763421-12763436                       27   8.8  

>12_01_0773 -
           7039294-7039422,7039440-7039479,7039557-7039649,
           7039900-7040010,7040091-7040342,7040407-7040903,
           7040923-7041777,7041883-7042143,7042183-7042551,
           7042637-7042876
          Length = 948

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 354 PREHNRETNQP*FYSNFEDNTQMEQKELVVRSKHFGRGPACANSISAPRNSYNDMTISFR 175
           PR   +ET     + +F++NT      L+ RS   G+    A +I+ P  +YN+  I   
Sbjct: 381 PRPETKETEPDYPFDDFKENTPCRLHVLIGRS---GKTLEAATAIAIPGRTYNEQFIPDA 437

Query: 174 Y*KL 163
           Y K+
Sbjct: 438 YAKV 441


>03_05_0220 +
           22063411-22063468,22063535-22063545,22064478-22064609,
           22064696-22065799,22065874-22066566,22066968-22067019,
           22067861-22067916,22067917-22068063
          Length = 750

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 374 GQTPTKSQENTTGKRINRNSIVILKTI 294
           GQ  T ++  TTGKRI +  +V L+T+
Sbjct: 337 GQGKTSARRKTTGKRIQKRDVVDLRTL 363


>11_04_0370 +
           16891334-16891469,16891556-16891707,16893277-16893639,
           16893832-16893929,16893983-16896029
          Length = 931

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 81  VRLAFFSLYVYIYTLYFDAHVVLW 152
           ++L F SL +Y+   YFD  +V+W
Sbjct: 337 LKLCFVSLSLYLKDTYFDESIVVW 360


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 423 HYNTYNPNLHIYKKHGRPDPYQEPR 349
           HY  YNP +  Y+++G+   Y +P+
Sbjct: 259 HYPGYNPYMQQYQQYGQYQQYTQPQ 283


>11_05_0007 - 18324969-18325063,18326580-18326745,18327078-18327275,
            18327377-18327643,18328070-18328129,18328767-18329033,
            18329156-18329359,18329441-18331496,18332517-18333358
          Length = 1384

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -3

Query: 291  QMEQKELVVRSKHFGRGPACANSISAPRNSYNDMTISFRY*KL*CLTIKLHVHQNIKCKY 112
            + E+KE +++   FGRG  C   I         +TIS +   +  LT     H  +  +Y
Sbjct: 1228 KQEEKEGIIKIGSFGRGGGCRCDIKVTPQHLESITISSKI-VINSLTFSYRSHDGL--QY 1284

Query: 111  IRTVKRTQGELDYNLVL 61
            I       GE +Y + L
Sbjct: 1285 ILGPWGGGGENNYKINL 1301


>08_02_1002 +
           23439642-23440046,23440558-23440761,23440874-23440990,
           23441116-23441511,23441586-23441938,23442067-23442187,
           23442602-23442781,23442813-23442896,23444398-23444523,
           23445286-23445588
          Length = 762

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 413 RTIPTCTFTKNTGGQTPTKSQENTTGKRINRNSIVILKTIPK 288
           RTIP+     N GG  P K  ++ T      +S   LKT+PK
Sbjct: 324 RTIPSM----NHGGDRPGKENQSCTTNSFRDHSRFPLKTVPK 361


>08_02_0116 + 12762009-12763021,12763421-12763436
          Length = 342

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -3

Query: 315 YSNFEDNTQMEQKELVVRSKHFGRG--PACANSISAPRNSYNDMTISFRY*KL*CLTIKL 142
           Y  F+D+ ++      ++ K F     P   N I      YND+ I F +    C  +KL
Sbjct: 203 YIMFDDSCELN----CLKDKIFAHSDLPCSRNVIFHIFGEYNDLGIYFVHRVYICSDLKL 258

Query: 141 HVHQNIKCKYIRTVKRTQ 88
            VH +  CK  + V   Q
Sbjct: 259 PVHVDKTCKLEKNVIANQ 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,901,074
Number of Sequences: 37544
Number of extensions: 295889
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)