Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5206
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -1

Query: 365 PTKSQENTTGKRINRNS-----IVILKTIPKWNRKN*WSDRSILVGVPPVPTQSPHPEI 204
           P  S E T GK + R S      +    + +  R    +   IL  VPP PT +P PEI
Sbjct: 8   PVTSVEGTQGKYVKRESPPTVPSLAATAVSRTRRSPIAASTLILSSVPPPPTSTPPPEI 66


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical
           protein F13A7.10 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 425 NITIRTIPTCTFTKNTGGQTPTKSQENTTGKRINRNSIVI 306
           NI ++  P   FTKN  GQ PT   E+  GK++   S VI
Sbjct: 56  NINLQQKPDWYFTKNYKGQVPT--LEHAEGKKLVIESAVI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,280
Number of Sequences: 27780
Number of extensions: 288680
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)