Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5206
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.25 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 102 LYVYIYTLYFDAHVVLW 152
           ++ Y++ LY D HV++W
Sbjct: 47  MFTYLHLLYQDVHVMIW 63


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 408 CTYCNVRYRVSNS 446
           C +CN RYR  NS
Sbjct: 38  CEFCNRRYRTKNS 50


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 227  LAQAGPLPKCFD 262
            +A A P+P CFD
Sbjct: 1048 MASAAPMPACFD 1059


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 37 IVRGIENN*D*IIVKFALR 93
          ++R + NN D ++VK  LR
Sbjct: 35 LIRPVSNNNDTVVVKLGLR 53


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 591 PIDMYFCLRYFELFSVKKER 532
           P+D+  C  Y E FS  K++
Sbjct: 124 PMDIQICPIYIESFSYHKQK 143



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 328 IRFPVVFSWLLVGVWPPVFF 387
           I FP++F   ++  WP + F
Sbjct: 368 IGFPILFMLFIILYWPILLF 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,751
Number of Sequences: 438
Number of extensions: 4362
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)