Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5205
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   1.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   2.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   3.4  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    24   4.5  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    24   5.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   5.9  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   7.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    23   7.9  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 235 GGRAHSPPDVKWILEPIDIYN 173
           GG  H P  V W+L P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 226 AHSPPDVKWILEPIDIYNVNAPPTLR 149
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 92   AFRFEGWGSRNYTETLELISQGGWRIYVVDVYGLQYPLNIRWAVSSSTHI 241
            AF  +   S   T+ + +I   G   Y   +    YP   RWAV+++T+I
Sbjct: 889  AFANQTAQSNKLTQPISIIKTDGDE-YKAKMEINDYPQQARWAVTNNTNI 937


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 241 YMGGRAHSPPDVKWILEP 188
           ++GG  +   D +WILEP
Sbjct: 88  WLGGSTNGEDDSEWILEP 105


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 176 VDVYGLQYPLNIRWAVSSSTHI 241
           +DV+  + P NI+W+ S + ++
Sbjct: 74  IDVHNERDPANIKWSASGAEYV 95


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 125 YTETLELISQG-GWRIYVVDVYGLQYPL 205
           Y   LE  ++G GWR+YV+  Y  ++ L
Sbjct: 309 YEYQLERETRGYGWRLYVLQEYSPKFTL 336


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 209  C*VDTGAHRHLQRKCATHL 153
            C +DTG HR ++     HL
Sbjct: 981  CVIDTGVHREMRYNSRRHL 999


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 272  PRVFFFFFYCLYGWTSSQP 216
            P  F FF  C Y + +SQP
Sbjct: 1538 PACFAFFTICAYTFMNSQP 1556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,791
Number of Sequences: 5004
Number of extensions: 26119
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)