Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5205
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   0.66 
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   0.66 
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    26   6.2  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    25   8.1  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical ...    25   8.1  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 299 IGRIGYRAPPRVFFFFFYCLY 237
           IG  G+ APP VF FFF+  Y
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGY 368


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 299 IGRIGYRAPPRVFFFFFYCLY 237
           IG  G+ APP VF FFF+  Y
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGY 366


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical
           protein D2021.1 protein.
          Length = 1168

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 57  HHPDYFCREAVMHFGL 104
           HHPD F  +  M+FGL
Sbjct: 120 HHPDLFSHDPSMYFGL 135


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 134 TLELISQGGWRIYVVDVYGLQYPLNIRW 217
           +++LI     RI+   VYG++ P+N+ W
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSW 245


>U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical
           protein C06E4.7 protein.
          Length = 230

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 160 VAHLRCRCL-WAPVST*HQVGCELV 231
           VA  +C C  W   ST   +GCELV
Sbjct: 30  VAERQCICASWEKASTQSDIGCELV 54


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 214 PDVKWILEPIDIYNVNAPPTLRYEF*GLSIVTAAP 110
           PD K +L P+  Y+    PTL +    L  ++A P
Sbjct: 329 PDAKNLLTPVQRYDTPGCPTLPHHLIALCDISADP 363


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 89  NAFRFEGW--GSRNYTETLELISQGGWRIYVVD 181
           NA RFE     S+N  E +E ++ G W I + D
Sbjct: 296 NATRFENNKNSSKNVAEVVEKMNNGDWPIQIED 328


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 144 SSKVSV*LRLPHPSNRNALLLHDRNSQGGGTYPCGLTRGPTTSHYAN 4
           +S + V    P  SN+N +L    N+QG      G+    TT  Y N
Sbjct: 154 NSVLGVNAGFPQSSNQNQVLRDQSNNQGYMNNNQGMYNTQTTQGYGN 200


>AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical
           protein ZC250.2 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 54  YHHPDYFC 77
           +HHPDYFC
Sbjct: 122 HHHPDYFC 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,096,468
Number of Sequences: 27780
Number of extensions: 161818
Number of successful extensions: 303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)