Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5200
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   2.9  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   5.0  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   6.6  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 174 NLRSLCLTFVLHNSIVMEF*GISLSRLNPLP-TGQCVPVMSSLSRNLIVILIDYTRAFRD 350
           NL S C  F+LH+ + M    ++ S L         V  +S L+R+ +V  I     F+ 
Sbjct: 754 NLLSFCSAFILHSQVSMGLVNLASSFLETYALVNDRVSSISGLNRSQLVEKI--AVLFQT 811

Query: 351 FFVLYSSKF 377
           F V++  +F
Sbjct: 812 FQVVFYCEF 820


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 204 RQKSNITSEGFIPQSVRRINPF*IQHQYRHLL 109
           R   +  S G+I +S  ++NP  +++QY + L
Sbjct: 402 RMSQSFFSVGYIAKSTFKLNPLRLRNQYIYFL 433


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 177 LRSLCLTFVLH----NSIVMEF*GISLSRLNPLPTGQCVPVMSSLSRNLIVILIDYTRAF 344
           +R LCLT   H    + +++    ISL  +NP    + + ++  L   LI  ++ ++ ++
Sbjct: 166 IRFLCLTMKGHCATVSQLLLGLKYISLDEINPEEKKKVLTLLLLLGSRLIASILQHSNSY 225

Query: 345 RD 350
            D
Sbjct: 226 FD 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,079
Number of Sequences: 5004
Number of extensions: 36377
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)