Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5200
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    31   0.27 
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    31   0.27 
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    31   0.27 
M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein ( C.ele...    31   0.27 
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    30   0.81 
Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 256 FNLDNEIP*NSITIELCKTKVKHNERRFHTTKRPSN 149
           FNL+N I  NS+  E+ K   K+N+++  + KR SN
Sbjct: 545 FNLENLISSNSLNDEVQKQLKKNNDKKLESDKRRSN 580


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 256 FNLDNEIP*NSITIELCKTKVKHNERRFHTTKRPSN 149
           FNL+N I  NS+  E+ K   K+N+++  + KR SN
Sbjct: 550 FNLENLISSNSLNDEVQKQLKKNNDKKLESDKRRSN 585


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 256 FNLDNEIP*NSITIELCKTKVKHNERRFHTTKRPSN 149
           FNL+N I  NS+  E+ K   K+N+++  + KR SN
Sbjct: 560 FNLENLISSNSLNDEVQKQLKKNNDKKLESDKRRSN 595


>M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein (
           C.elegans DNA homologousto the v-abl oncogene. ).
          Length = 552

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 256 FNLDNEIP*NSITIELCKTKVKHNERRFHTTKRPSN 149
           FNL+N I  NS+  E+ K   K+N+++  + KR SN
Sbjct: 411 FNLENLISSNSLNDEVQKQLKKNNDKKLESDKRRSN 446


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 252  LNPLPTGQCVPVMSSLSRNLIVI 320
            L+PL T  CVP++SS SRNL  I
Sbjct: 1523 LSPLNTSFCVPMISSRSRNLPTI 1545


>Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical
           protein ZK792.7 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 130 LNSKGVNSTDALWYETFARYV 192
           L  +G+ S D  WYET+ R++
Sbjct: 100 LFDEGIESNDDEWYETYERFI 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,444
Number of Sequences: 27780
Number of extensions: 195848
Number of successful extensions: 297
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)