Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5197
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    27   6.6  
Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical...    27   8.7  
AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 206 YCDTNVIG-KQFGDTDCHWLEVPRCQSYITSQVISI 310
           YC     G K+ GD D  WL++P C  ++ S ++++
Sbjct: 354 YCPKLAAGIKKAGD-DYSWLKMPLCIIFLLSMIVNV 388


>Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK1037.7 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 206 YCDTNVIGKQFGD---TDCHWLEVPRCQSYITSQVISI 310
           +CD  +IGK  GD    D +W +     +Y+ S VI +
Sbjct: 54  FCDIFIIGKTLGDHIYEDVYWTDCWPRDTYLCSVVILV 91


>AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical
           protein F44E7.7 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 194 SFNVYCDTNVIGKQFGD--TDCHWLEVPRCQSYITSQV 301
           +F V C  +V+     +  TD HWLE P  +S+I S V
Sbjct: 66  NFTVICMEDVVVDFHSNNRTDLHWLEDPSQKSWIFSGV 103


>AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical
           protein T05E7.1 protein.
          Length = 474

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 155 GAYVDTYNKKSYYYGVQLL 99
           G +  TY+ K+YYY +QLL
Sbjct: 127 GHFFKTYDPKTYYYTLQLL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,657
Number of Sequences: 27780
Number of extensions: 203073
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)