Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5196
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   0.88 
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    26   2.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   4.7  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   4.7  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    24   6.2  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    24   6.2  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    24   8.2  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 339  LKEKFLLCDNTYDLTSYIRLTAGNL*PMTISVAKLLSNDIRIAINVERSQY 187
            L EKF+L  + Y L   ++ +  +   +++S+ KLLS     A+   R QY
Sbjct: 1082 LAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQY 1132


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 225 DIRIAINVERSQYCQLLSSSWIQVRTLTHTIKTSYYYGVQLLKYILCL 82
           D +I  N   S+ C+L S SW+        ++ S    +Q   Y+ CL
Sbjct: 48  DAQIRPNDYNSRLCKLPSKSWVSSTVTNEKLRESRRLALQ--AYVQCL 93


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 228 NDIRIAINVERSQYCQLLSSSWIQVRTLTHTIKTSYY-YGVQLLKYILC 85
           ND  I   +  +Q C  L  S  QV  LT   + S++ Y +  L+  +C
Sbjct: 271 NDFAILSPLIHAQICFFLPKSVWQVNGLTSLFRASFHGYSMYALERKMC 319


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 199 TISILPAVIFFMDTGAYVDTYNKNIILLWRS 107
           ++SI P VI  +DT  ++  ++ + I  WR+
Sbjct: 639 SVSIKPDVILLLDTYFHILIFHGSTIAQWRN 669


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 174 SSSWIQVRTLTHTIKTSYYYGVQLLKYILCLFFFSITALG 55
           S +WI V  L    K  +Y+ + L  ++    F S   LG
Sbjct: 159 SRAWIMVVVLAQKYKVLFYHSLNLRDWVKLSEFGSAGVLG 198


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 172 FFMDTGAYVDTYNKNIILLWRSVVEIYFMLVF 77
           +F+  G Y+   ++  I+LWR++    F+  F
Sbjct: 321 WFIKRGIYLTLLDRCEIILWRNLFRKVFLFTF 352


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 196 ISILPAVIFFMDTGAYVDTYNKNIILLWRS 107
           +S+ P VI  +DT  ++  ++ + I  WR+
Sbjct: 635 VSVKPDVILLLDTFFHILIFHGDTIAQWRN 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,718
Number of Sequences: 5004
Number of extensions: 27906
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)