Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5196
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247... 28 1.9
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353... 27 3.4
07_03_0394 - 17633753-17636788 27 4.4
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109... 27 4.4
07_01_0152 - 1088664-1089092 27 4.4
07_01_0132 + 971942-972370 27 4.4
11_06_0270 + 21803292-21803672 27 5.9
07_01_0150 - 1084802-1085230 27 5.9
07_01_0145 + 1066127-1066558 27 5.9
11_06_0268 + 21797538-21797966 26 7.7
11_06_0267 + 21795762-21796190 26 7.7
07_01_0148 - 1080134-1080562 26 7.7
>04_04_1334 -
32723950-32724121,32724527-32724558,32724665-32724708,
32724962-32725123,32725984-32726422
Length = 282
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 190 ILPAVIFFMDTGAYVDTYNKNIILLWRSVVEIYFMLVFF 74
+L V+ F D+ Y TY L+W V++YF V++
Sbjct: 201 VLLFVLSFKDSRGYQGTYGVLAGLIWFLNVQLYFRTVYY 239
>01_07_0064 +
40834649-40834786,40834934-40834997,40835333-40835391,
40835602-40835677,40835775-40835846,40837641-40837728,
40838239-40838497,40838766-40839000,40839447-40839470,
40839910-40839997,40840110-40840300,40841082-40841322,
40841803-40842556
Length = 762
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 187 ILRSFNVYCDTNVIGKQFGDTDCHWLEV 270
IL F Y D V K+FGD HW+ +
Sbjct: 165 ILEDFKAYAD--VCFKEFGDRVAHWITI 190
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 148 RTHLYP*RR*QLAILRSFNVYCDTNVIGKQFGDTDCHW 261
R+HL+ RR + R V+ GK FGD C W
Sbjct: 796 RSHLWSMRRSKANFFRLMQVFSGFIAAGKWFGDV-CQW 832
>07_01_0154 -
1094256-1094672,1094954-1094977,1095867-1095891,
1096014-1096304,1096391-1096470,1096953-1097052,
1097143-1097204,1097650-1097750,1097940-1098117,
1098298-1098924,1099014-1099100,1099804-1099905,
1100265-1100348,1100580-1100657
Length = 751
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + +LLW SVVE+Y
Sbjct: 676 HTFKKIKQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVY 721
>07_01_0152 - 1088664-1089092
Length = 142
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + +LLW SVVE+Y
Sbjct: 67 HTFKKIKQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVY 112
>07_01_0132 + 971942-972370
Length = 142
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + +LLW SVVE+Y
Sbjct: 67 HTFKKIKQTVSYAREVTAFVEKGKLKKITGVKTKELLLWLSVVEVY 112
>11_06_0270 + 21803292-21803672
Length = 126
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + ++LW SVVE+Y
Sbjct: 51 HTFKKIKQTVSYATEVTAFVEKGKLKKITGVKTKELMLWLSVVEVY 96
>07_01_0150 - 1084802-1085230
Length = 142
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + +LLW SVVE+Y
Sbjct: 67 HTFKKIKQTVSYAGEVTAFVEKGKLKKIAGVKTKELLLWLSVVEVY 112
>07_01_0145 + 1066127-1066558
Length = 143
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + +LLW SVVE+Y
Sbjct: 68 HTFKKIKQTVSYAGEVTAFVEKGKLKKIAGVKTKELLLWLSVVEVY 113
>11_06_0268 + 21797538-21797966
Length = 142
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + ++LW SVVE+Y
Sbjct: 67 HTFKKIKQTVSYATEVTAFVEKGKLKKIAGVKTKELMLWLSVVEVY 112
>11_06_0267 + 21795762-21796190
Length = 142
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F++ G + ++LW SVVE+Y
Sbjct: 67 HTFKKIKQTVSYATEVTAFVEKGKLKKIAGVKTKELMLWLSVVEVY 112
>07_01_0148 - 1080134-1080562
Length = 142
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 223 HSYRNKR*TISILPAVIFFMDTGAY--VDTYNKNIILLWRSVVEIY 92
H+++ + T+S V F + G + +LLW SVVE+Y
Sbjct: 67 HTFKKIKQTVSYANEVTAFTEKGKLKKITGVKTKELLLWLSVVEVY 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,754,333
Number of Sequences: 37544
Number of extensions: 149450
Number of successful extensions: 263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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