Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5196
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    27   3.9  
Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical...    27   5.2  
AC024838-5|AAY43990.1|  301|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 208 YCDTNVIG-KQFGDTDCHWLEVPRCQSYITSQVISI 312
           YC     G K+ GD D  WL++P C  ++ S ++++
Sbjct: 354 YCPKLAAGIKKAGD-DYSWLKMPLCIIFLLSMIVNV 388


>Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK1037.7 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 208 YCDTNVIGKQFGD---TDCHWLEVPRCQSYITSQVISI 312
           +CD  +IGK  GD    D +W +     +Y+ S VI +
Sbjct: 54  FCDIFIIGKTLGDHIYEDVYWTDCWPRDTYLCSVVILV 91


>AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical
           protein F44E7.7 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 196 SFNVYCDTNVIGKQFGD--TDCHWLEVPRCQSYITSQV 303
           +F V C  +V+     +  TD HWLE P  +S+I S V
Sbjct: 66  NFTVICMEDVVVDFHSNNRTDLHWLEDPSQKSWIFSGV 103


>AC024838-5|AAY43990.1|  301|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.8 protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 342 ILKEKFLLCDNTYDLTSYIRLTAGNL*PMTISVA 241
           IL E+F LC+      S+I++   +   +T+S+A
Sbjct: 256 ILAERFSLCELMVSWKSFIKIVQAHFLRITVSIA 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,156,104
Number of Sequences: 27780
Number of extensions: 154757
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)