Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5195
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076...    31   0.55 
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846...    27   8.9  

>02_05_0177 +
           26505956-26506202,26506838-26507247,26507448-26507624,
           26507775-26507999,26508089-26508265,26508357-26508593,
           26508855-26508944,26509102-26509254
          Length = 571

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 201 EATAFF*FRSYILDIHLGAILFLNSASTFLIQF 299
           E TAF  F   +LD H+GA     S +++ +QF
Sbjct: 126 ELTAFLVFTQLMLDYHIGAASIARSLASYFVQF 158


>09_05_0015 -
           20083143-20083308,20083645-20084017,20084362-20084675,
           20085164-20085512,20085678-20085837,20086307-20086618,
           20086700-20086820,20087225-20087277
          Length = 615

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 56  LTLNLASEF*F*IRQLPLISNISGYILVLNSAATFC 163
           L LNLA+ F + +    ++    GY   L +AAT C
Sbjct: 233 LVLNLANTFLYMVNTYIVVPTADGYATSLGAAATAC 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,676,729
Number of Sequences: 37544
Number of extensions: 120276
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)