Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5195
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical
           protein C55A1.14 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 131 ILVLNSAATFCLLI*QLFFIYKLRSYSFFLIPQLYFRYTFRSY-FISKFGVYIF 289
           +++  +   F +LI ++F  +K+ + SF+L+P   F   +  Y FI  F + +F
Sbjct: 62  VMIKMAYMIFVILICRVFPCFKINTLSFYLLPIALFLTFYTLYIFIQSFHLLMF 115


>Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.8 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 137 VLNSAATFCLLI*QLFFIYKLRSYSFFLIPQLYFRYTFRSYFISKFGVY 283
           V++S +T C L    F  + + S  FF+I  +    ++ +Y++    +Y
Sbjct: 231 VIDSTSTICFLTFVQFIFFLVYSLGFFIIKSIREIISYENYYLVAVWLY 279


>Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical
           protein T19C4.9 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 188 IYKLRSYSFFLIPQLYFRYTFRSYFISKF-GVYIFDSIS*LNVFLKLAA 331
           IY L S + +L+       T R  F S F G+YIFD++  +N F  + A
Sbjct: 13  IYGLPSIALYLLTSFVI-ITHRKIFDSSFFGIYIFDAL--MNTFTFIIA 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,468,341
Number of Sequences: 27780
Number of extensions: 141494
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)