Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5192
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   1.6  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   2.9  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    24   8.8  

>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 48  LLLLPGKFLASTFTVCRNNRRKSIRQFRES**QNV 152
           L +L GKF A  +   R N R S++  RE+  +NV
Sbjct: 383 LRVLKGKFEADPYEALRINTRSSVQFLRENHVENV 417


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 154 ATFCYYDSLNCRIDLRLLLRHTVKVLAKNFPGKSNR 47
           A +   D L     L+L+ RHT   +A+ FPG +++
Sbjct: 285 ADYVLADKLVPEAVLQLIPRHTPLFIARKFPGNADK 320


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 351 RTVDIAYVKKKKKNSRGGPVPNSPYSES 434
           R +D+ YV  +  N RGG   N   SES
Sbjct: 410 RYIDLNYVDVQYTNLRGGAYGNGNNSES 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,559
Number of Sequences: 5004
Number of extensions: 29031
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)