Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5191
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    29   3.2  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear recep...    28   5.5  
Z81117-8|CAB03316.2|  334|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 416 FNFNYFLYYIPKTTLVYKILI-----STQQWVPSWTSIILYPVTDSLIVSTLCSIQ 568
           F  NYF++Y   +T+ Y I++       Q  + +W   + +PV    IV+   SI+
Sbjct: 273 FILNYFMFYGTSSTMAYSIVLRPFGNDLQICMIAWILFLTHPVFKKTIVNPEASIE 328


>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 144  ILRYQNAISMLLEIIHRSTSKVLIMNLIMSLQHMNRIKLLVMIEIIYFNCYLS 302
            +   QN  S++  I+  S+  V   NL+ S    N++ L  +I+ + ++C L+
Sbjct: 1004 VFNIQNTKSVIPIILAISSLSVTFPNLVASFSAENQVSLQSLIQFVSWSCMLN 1056


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 144  ILRYQNAISMLLEIIHRSTSKVLIMNLIMSLQHMNRIKLLVMIEIIYFNCYLS 302
            +   QN  S++  I+  S+  V   NL+ S    N++ L  +I+ + ++C L+
Sbjct: 1004 VFNIQNTKSVIPIILAISSLSVTFPNLVASFSAENQVSLQSLIQFVSWSCMLN 1056


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 144  ILRYQNAISMLLEIIHRSTSKVLIMNLIMSLQHMNRIKLLVMIEIIYFNCYLS 302
            +   QN  S++  I+  S+  V   NL+ S    N++ L  +I+ + ++C L+
Sbjct: 1004 VFNIQNTKSVIPIILAISSLSVTFPNLVASFSAENQVSLQSLIQFVSWSCMLN 1056


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +3

Query: 138 THILRYQNAISMLLEIIHRSTSKVLIMNLIMSLQHMNRIKLLVMIEIIYFNCYLSQRFRI 317
           +H ++Y +A+   L+I +  T+ V    LI  +  +NR+   +    + F C +   F+ 
Sbjct: 269 SHQIKYSSALFRHLQITNPGTAPVRFQELISLVHVINRVTNDMQHVSMMFQCMIPS-FKF 327

Query: 318 YNLLKDKWI 344
             L+ D ++
Sbjct: 328 KQLVTDTFV 336


>AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear receptor
           NHR-51 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +3

Query: 138 THILRYQNAISMLLEIIHRSTSKVLIMNLIMSLQHMNRIKLLVMIEIIYFNCYLSQRFRI 317
           +H ++Y +A+   L+I +  T+ V    LI  +  +NR+   +    + F C +   F+ 
Sbjct: 221 SHQIKYSSALFRHLQITNPGTAPVRFQELISLVHVINRVTNDMQHVSMMFQCMIPS-FKF 279

Query: 318 YNLLKDKWI 344
             L+ D ++
Sbjct: 280 KQLVTDTFV 288


>Z81117-8|CAB03316.2|  334|Caenorhabditis elegans Hypothetical
           protein T06E6.7 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 511 YYFVSCH*LTHSQYSLQYSIQYFNSNKLHLFIICIWM*N-YVNAVNTL 651
           Y  +SC+   H+Q +  Y+I  F+ + +   +I +W  N Y   VN +
Sbjct: 252 YIVISCYLNYHNQSANNYTIVSFSFHGITSSMILLWTYNPYTKVVNAI 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,619
Number of Sequences: 27780
Number of extensions: 284587
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)