Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5191
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               24   1.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.4  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 74  IVNVLRYLHLYVH*MCLAISAYSYTPISKCN 166
           ++++LR ++L++    + I++Y  TP+  CN
Sbjct: 1   MISMLRCIYLFLS--VILITSYFVTPVMPCN 29


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 164 NKHAIGNNSQEYIKGSHNEFD 226
           N H + NN  + I+ ++N+ D
Sbjct: 411 NTHCVNNNQNDNIQNTNNQND 431


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 135 LTHILRYQNAISMLLEIIHRSTSKVL 212
           L ++ +Y      LLEIIH  T KV+
Sbjct: 234 LFNLTKYGKNQIKLLEIIHGLTKKVI 259


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 531  VTGYKIILVQDGTHCWV-DIKILYTS 457
            +TGYK+I++  G   +  D KI  +S
Sbjct: 1114 ITGYKVIVIPSGGGIYTKDTKITSSS 1139


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 180 EIIHRSTS-KVLIMNLIMSLQHMNRIKLLVMI----EIIYFNCYLSQRFRIYNLL 329
           +I+H   + ++L +  ++SL  + R+  LV      E +YF    S   RI+NL+
Sbjct: 197 QILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRIFNLI 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,824
Number of Sequences: 438
Number of extensions: 3853
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)