Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5189
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   4.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.4  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   5.8  

>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 161 QRSTPRSKPLISPKRRPIKLSQSMTK 238
           ++ T + KPL   K++P+K S+ ++K
Sbjct: 182 EKHTVKQKPLREKKKKPLKSSEEISK 207


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 1    VYKNSKMRFLIVSALLACVAAAPSHLVPFPAVAYHAVAI 117
            ++ N+K++ LI ++ LA     P+HLV      Y+   I
Sbjct: 1441 LFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKI 1479


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 92  PWRTTLWPSQLLSPLYHLETFRLQRSTPRSKPLISPKRRPIKLSQSMTKTQKITTSKPL 268
           PW+  +  S+ L+     +    +  +    PL SPK +PI   Q+  KT    +S PL
Sbjct: 7   PWKIRVDESRGLAGNSGTKKSNHEALSRLQSPLNSPKLQPIGSPQASRKTSGSGSSAPL 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,897
Number of Sequences: 5004
Number of extensions: 38058
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)