Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5189
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727...    29   3.4  
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274...    28   4.5  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    28   5.9  
02_05_0450 - 29117826-29118212,29118307-29118733,29119158-291192...    28   5.9  
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786...    28   5.9  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    27   7.8  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    27   7.8  
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192...    27   7.8  
01_06_1618 - 38681729-38683989,38685577-38685796                       27   7.8  
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284...    27   7.8  
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448...    27   7.8  

>01_07_0083 +
           40970890-40971015,40971886-40971994,40972679-40972790,
           40972944-40973100,40973609-40973761,40974143-40974292,
           40974803-40974999,40975446-40975473
          Length = 343

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 432 RCGSHGALS*LYGLTSHCTV*LRFSCFESVQGLPFLI-LNCPNTIDSLFLS 283
           +C S   +  +Y  T HC+      CF  +Q  P+LI + CP   D L LS
Sbjct: 84  KCSSPINVYAIYSYTIHCSTQAENICFWFIQNSPYLICVICPE--DHLHLS 132


>01_06_0656 -
           30926858-30927040,30927141-30927281,30927373-30927489,
           30927696-30927784,30927870-30928010,30928084-30928171,
           30928280-30928342,30928544-30928699,30928778-30928870,
           30929095-30929176,30929426-30929493,30929575-30930633
          Length = 759

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 16  KMRFLIVSALLACVAAAPSHLVPFPAVAYHAV 111
           + RF+   A+   + A+  HL P PA  YHA+
Sbjct: 35  RRRFVAFLAISVALVASYHHLAPAPASRYHAL 66


>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
            196685-196780,197248-197399,198683-198823,199068-199319,
            199463-199603,199686-200003,200146-200232,201025-202006,
            202091-202179,202968-203072,203155-204306,204844-205359,
            205455-205650,206299-207182
          Length = 1979

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 128  SPLYHLETFRLQRSTPRSKPLISPKRRPIKLSQSMTKTQKITTSKPL 268
            +P  HL+ FRL R+ P +      ++ P++L  + ++TQ    S P+
Sbjct: 1797 APAPHLQ-FRLPRAHPTAPVNQQQRQLPVRLESTCSRTQLTPVSTPV 1842


>02_05_0450 -
           29117826-29118212,29118307-29118733,29119158-29119296,
           29119426-29119530,29119624-29119705
          Length = 379

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 106 RGTPRLGMAPDGK-VRLQRRPVRRKQSEISSCCS 8
           RG+P+  +   GK V +QRR +  K   +S CCS
Sbjct: 19  RGSPQTALEGGGKLVMMQRRDLVTKGVTLSVCCS 52


>01_01_0994 -
           7861310-7862119,7862378-7862498,7862718-7862901,
           7862975-7863070,7863428-7863476,7863555-7863596,
           7863684-7863836,7865631-7865705,7866462-7866587
          Length = 551

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 6   QEQQDEISDCFRLTGLRCSRTFPSGAIPSRGVPRCGHPS 122
           ++ +D++SD    T  + S     G +P  G P  GHP+
Sbjct: 489 KKPEDKLSDIPEQTEAQASELVKEGPVPVEGKPIDGHPT 527


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 34  VSALLACVAAAPSHLVPFPAVAY 102
           V A+LA    APS  +PFPA A+
Sbjct: 225 VPAVLAAAGGAPSRRLPFPAGAF 247


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 50   PALQPHLPIWCHSQP-WRTTLWPSQLLSPLY 139
            P     L +W  S+P WRTT+W   L S  Y
Sbjct: 2675 PETSLQLVMWNGSRPYWRTTVWTGYLTSGQY 2705


>03_05_0612 +
           26117306-26118045,26118151-26118680,26119247-26119278,
           26119910-26121175
          Length = 855

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 143 GDRVGTTAGMATAWYATAGNGTRWEGA 63
           G   GT A M + W +   NG  W GA
Sbjct: 209 GQAAGTIADMRSDWASDQRNGVYWRGA 235


>01_06_1618 - 38681729-38683989,38685577-38685796
          Length = 826

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 65  HLPIWCHSQPWRTTLWPSQLLSPLYHLETFRLQRSTPRSKPLISPKRRPI 214
           ++ IW +  P  T +W +   +PL   +T RL  S   +  L+   R P+
Sbjct: 81  YMGIWYNKIPDHTKVWVANRRAPLSDPDTSRLAISADGNMVLLDRARPPV 130


>01_05_0110 +
           18225431-18226992,18227158-18228132,18228343-18228437,
           18228556-18228842
          Length = 972

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 18  DEISDCFRLTGLRCSRTFPSGAIPS 92
           D++ +CF+L  L+ S    +G+IPS
Sbjct: 576 DDLGNCFKLQSLKMSNNSLNGSIPS 600


>01_01_0602 -
           4484972-4485450,4485949-4485997,4486108-4486237,
           4486636-4486778,4486819-4486877,4487167-4487200,
           4487489-4487629,4487719-4487907,4488027-4488122,
           4488163-4488225,4488588-4489097
          Length = 630

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 164 RSTPRSKPLISPKRRPI---KLSQSMTKTQKITTSKP 265
           RS PRSK   S K +P+   K S+S + + K+  S+P
Sbjct: 560 RSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRP 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,880
Number of Sequences: 37544
Number of extensions: 302113
Number of successful extensions: 1208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)