Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5189
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-5|CAB04494.1|  382|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AM231685-1|CAJ77754.1|  375|Caenorhabditis elegans GDP-mannose 4...    29   2.3  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical ...    28   4.0  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    27   7.0  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   7.0  
AL033536-10|CAN86926.1|  345|Caenorhabditis elegans Hypothetical...    27   9.3  
AL033536-9|CAA22140.1|  344|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z81553-5|CAB04494.1|  382|Caenorhabditis elegans Hypothetical
           protein F56H6.5 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 148 LQVIEWGQQLGWPQRGTPRLGMAPDGKVRLQRRPVRRKQSEISS 17
           L   E G+QL W   G   +G   DG VR++  P   + +E+ +
Sbjct: 298 LAFAEIGEQLVWEGEGVDEVGKNQDGVVRVKVSPKYYRPTEVET 341


>AM231685-1|CAJ77754.1|  375|Caenorhabditis elegans GDP-mannose
           4,6-dehydratase protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 148 LQVIEWGQQLGWPQRGTPRLGMAPDGKVRLQRRPVRRKQSEISS 17
           L   E G+QL W   G   +G   DG VR++  P   + +E+ +
Sbjct: 291 LAFAEIGEQLVWEGEGVDEVGKNQDGVVRVKVSPKYYRPTEVET 334


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 4   YKNSKMRFLIVSALLACVAAAPSHLVPFPAVAYHAVAIPAVVPTLSP 144
           Y+N    FLIV  + A V A P+  + F    Y A + PAV   + P
Sbjct: 139 YQNGGTSFLIVYIICAFVFAVPAIHMEFALGQYAAKSPPAVFRRIMP 185


>AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical
           protein Y71D11A.1 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +2

Query: 41  PYWPALQPHLPIWCHSQ-PWRTTLW-PSQLLSPLYHLET----FRLQRSTPRSKPLIS 196
           PY  A++P+LPIW   + P     W P +    ++ LE       L   TP+S+ LIS
Sbjct: 149 PYVVAVEPNLPIWSIIETPVAAIDWDPEESYRLMFWLEDSHKGIDLVEETPKSRELIS 206


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 279 ISVYNGF-DVVIFCVLVIDCDSFIGRRLGEISGFD 178
           I +++ F + V+ C+L I CD+  GRR  +  G+D
Sbjct: 492 IMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYD 526


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 35  FPPYWPALQPHLPIW 79
           FPP+WP   P  P W
Sbjct: 435 FPPFWPPCPPPPPFW 449


>AL033536-10|CAN86926.1|  345|Caenorhabditis elegans Hypothetical
           protein Y53C10A.6b protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +2

Query: 116 SQLLSPLYHLETFRLQRSTPRSKP---LISP--KRRPIKLS 223
           + L SP  H +T R++RST   KP   LI     + PIKLS
Sbjct: 12  ASLQSPRAHFKTSRMERSTTSEKPAADLIREYLLKNPIKLS 52


>AL033536-9|CAA22140.1|  344|Caenorhabditis elegans Hypothetical
           protein Y53C10A.6a protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +2

Query: 116 SQLLSPLYHLETFRLQRSTPRSKP---LISP--KRRPIKLS 223
           + L SP  H +T R++RST   KP   LI     + PIKLS
Sbjct: 12  ASLQSPRAHFKTSRMERSTTSEKPAADLIREYLLKNPIKLS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,376
Number of Sequences: 27780
Number of extensions: 228450
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)