Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5189
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 114 HPSCCPHSITWRHSG 158
           HP   PH ITW   G
Sbjct: 357 HPQAGPHFITWYKDG 371


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 114 HPSCCPHSITWRHSG 158
           HP   PH ITW   G
Sbjct: 357 HPQAGPHFITWYKDG 371


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKRN 370
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKRN 370
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKRN 370
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKRN 370
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKRN 370
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKRN 370
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 517 ERSQDRRGRKSQR 555
           ERS+DRRGR   R
Sbjct: 313 ERSRDRRGRGRSR 325


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKRN 370
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 255 RQSRCKH*SSSGTGCRW 305
           R+SRC    S+ +G RW
Sbjct: 15  RESRCSVRCSAASGLRW 31


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 320 RIRNGKPWTLSKQLKR 367
           R+  GKP T S +LKR
Sbjct: 134 RVLPGKPTTTSDELKR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,539
Number of Sequences: 438
Number of extensions: 2923
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)