Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5188
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 31 0.17
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.40
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 0.69
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 1.6
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 2.8
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 2.8
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 3.7
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 27 3.7
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 27 3.7
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 3.7
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 3.7
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 27 3.7
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 27 3.7
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 4.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 4.9
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 4.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 4.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 4.9
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 26 6.4
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 26 6.4
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 26 6.4
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 26 8.5
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical ... 26 8.5
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 26 8.5
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 26 8.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 26 8.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 26 8.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 26 8.5
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPGAQAQ 277
LPGG P G SGPP RPGA Q
Sbjct: 203 LPGGDAP-PGPSGPPGRPGAPGQ 224
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -3
Query: 331 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 155
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 0.69
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 318 GTSGPPQRPGAQAQRETLGVRS 253
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 314 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 150
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 343 PGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 188
P RA SR ARR + ++ P P A R +S R R PS
Sbjct: 329 PAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -3
Query: 346 PPGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 167
PP RA SR RR +A + P P + + RS P+ P+R RR
Sbjct: 358 PPAPKRAKSRSKSPPARRRRSPSASKSP-PAPRRRRSPSKSRSPAPKREIPPAR---RRR 413
Query: 166 SP 161
SP
Sbjct: 414 SP 415
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -3
Query: 346 PPGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWS-- 173
PP R R S + A + +R+ P P + + +S PR R PS+ +
Sbjct: 407 PPARRRR-SPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPR 465
Query: 172 -RRSP 161
RRSP
Sbjct: 466 RRRSP 470
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 302 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 198
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 307 TTTEARRPGTARNTRRPKPTELSACCRERSETP 209
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 106 LPGAAGP-AGTPGKPGRPG 123
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 106 LPGAAGP-AGTPGKPGRPG 123
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 106 LPGAAGP-AGTPGKPGRPG 123
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 106 LPGAAGP-AGTPGKPGRPG 123
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 325 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 212
V +++RT+ RRP T R P+ SA R++ ++
Sbjct: 26 VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 101 LPGAAGP-AGTPGKPGRPG 118
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 68 LPGAAGP-AGTPGKPGRPG 85
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 101 LPGAAGP-AGTPGKPGRPG 118
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 101 LPGAAGP-AGTPGKPGRPG 118
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 101 LPGAAGP-AGTPGKPGRPG 118
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 101 LPGAAGP-AGTPGKPGRPG 118
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 339 GGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 244
GGA P +GT+ PP P + L +R Q+
Sbjct: 266 GGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 339 GGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 244
GGA P +GT+ PP P + L +R Q+
Sbjct: 566 GGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 101 LPGAAGP-AGTPGKPGRPG 118
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 101 LPGAAGP-AGTPGKPGRPG 118
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 90 LPGAAGP-AGTPGKPGRPG 107
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 345 LPGGAEP*AGTSGPPQRPG 289
LPG A P AGT G P RPG
Sbjct: 106 LPGAAGP-AGTPGKPGRPG 123
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPG 289
P PGG AG +GPP PG
Sbjct: 149 PCPGGPPGPAGPAGPPGPPG 168
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPG 289
P PGG AG +GPP PG
Sbjct: 149 PCPGGPPGPAGPAGPPGPPG 168
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 289 RPGTARNTRRPKPTEL 242
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPG 289
P PGG AG +GPP PG
Sbjct: 149 PCPGGPPGPAGPAGPPGPPG 168
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPG 289
P PGG AG +GPP PG
Sbjct: 149 PCPGGPPGPAGPAGPPGPPG 168
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 346 PPGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 167
PP + A S + +++E +A+NT P TE +ET KP + V
Sbjct: 107 PPPQSSAESSGLPSSSEQEEEASAQNTTVPSSTE-ELMTLGVTETNMKTEKPDKGVLKIL 165
Query: 166 SP 161
SP
Sbjct: 166 SP 167
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 328 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 236
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 328 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 236
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPGAQAQ 277
P PGG G GPP RPG+ Q
Sbjct: 151 PCPGGRP---GPPGPPGRPGSDGQ 171
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 314 HQDHHRGPAPRHSEKHSASEADRAE 240
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 338 AVQSREQGHQDHHRGPAPRHSEKHS 264
A Q++EQ HQ HH+ P+ + S
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS 350
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -2
Query: 332 QSREQGHQDHHRGPAPRH-SEKHSASE 255
Q+ H HH PAPRH S H E
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIE 57
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 79 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 228
+R++ +T L+Q + S+ +YYN N +V S DG SL P
Sbjct: 218 IRIAFITCLVQACGTALSVIRYYNMNTSMAVTLANFIPFIS-DGLSLVQP 266
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 172 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 285
E + V DG+SL + SKR+ L+ +D + + LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 235 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 140
CC S P+ + SRP + HFHC I
Sbjct: 97 CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127
>AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical
protein Y87G2A.7 protein.
Length = 489
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 79 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 231
++LS+ L QQ+ S+ + Y ++ V KQ+ ++ GA PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 314 HQDHHRGPAPRHSEKHSASEADRAE 240
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 115 IVVLTSSSWRDVIKP 71
I+ TS++W+DVIKP
Sbjct: 15 IIPTTSATWKDVIKP 29
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPGAQAQ 277
P GG+ P AGT PP P + Q
Sbjct: 315 PQAGGSPPPAGTGSPPPPPRQKRQ 338
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPGAQAQ 277
P GG+ P AGT PP P + Q
Sbjct: 336 PQAGGSPPPAGTGSPPPPPRQKRQ 359
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 348 PLPGGAEP*AGTSGPPQRPGAQAQ 277
P GG+ P AGT PP P + Q
Sbjct: 321 PQAGGSPPPAGTGSPPPPPRQKRQ 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,525,930
Number of Sequences: 27780
Number of extensions: 173928
Number of successful extensions: 1094
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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