Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5187
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    28   1.7  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   5.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   5.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   5.2  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   6.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   6.9  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   6.9  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.1  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 625 HNGFNGCRHNTGPTGAPTHIKAVPALHLVPEFGTRVIDRPLISW 756
           H GF+  + NT    A   +  +PA H  P      I+R  +SW
Sbjct: 382 HEGFDVPKSNTSSNDAKDGLSVIPAYH-SPFTSLEKIERTEVSW 424


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 334 KLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEYNYS 495
           K A ++  T    P P   ++AP+A   HS P         +++A ++ +P  E ++S
Sbjct: 119 KRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFS 176


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 3   FTESNQNVFQINSTVRICGVVPSWSPGG 86
           +  S QN+F+I   ++I G+  S+SP G
Sbjct: 271 YRPSPQNIFEIFEILKILGIPASFSPIG 298


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 301 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAH 450
           PQT   ++P+  +A +TPV+  + P P T    P  ++   AP+    AH
Sbjct: 222 PQTTQDSSPILTMAPSTPVSVGSTP-PSTPSVLP--IAKQLAPMNVCKAH 268


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +1

Query: 508 HSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAHNGF 636
           H   N ++Q V + +           DG    +  T D HNGF
Sbjct: 17  HVSQNIAKQVVNNENVFMKLVMTRMLDGKTEVIPLTTDVHNGF 59


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 199 GQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLG 65
           GQ   ++ P+R N+H+GF + V  + +     +S+     G QLG
Sbjct: 781 GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA----GKQLG 821


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 145 RHGVRCSGRKLPQQMSSGPVPPGD 74
           R+ + CSGRKL +Q  +G    GD
Sbjct: 59  RNEITCSGRKLYRQKGTGHARVGD 82


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 478 YEYNYSV---ADGHSGDNKSQQEVRDGDAVKGSYS 573
           +++N+S    +DGHS D   QQ +   D+V   +S
Sbjct: 104 FDFNFSCYFGSDGHSNDTLCQQYIDVADSVGEQFS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,287
Number of Sequences: 5004
Number of extensions: 46685
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)