Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5187
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0256 - 8362374-8363003 35 0.063
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524... 35 0.063
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 35 0.063
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448 33 0.25
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 31 0.77
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 31 1.3
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858... 30 1.8
02_05_0092 + 25749070-25750638 30 2.4
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 29 3.1
05_07_0125 + 27861368-27862282 29 3.1
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 29 3.1
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 29 4.1
12_02_0441 + 19115990-19116478 29 5.4
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 28 7.2
02_05_0174 - 26486955-26487728 28 7.2
11_06_0284 + 21909758-21913645 28 9.5
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 9.5
04_03_0314 - 14238620-14240128 28 9.5
>02_02_0256 - 8362374-8363003
Length = 209
Score = 35.1 bits (77), Expect = 0.063
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 283 IIRHDQPQTI-NYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAE 459
++R DQ T+ AAP A + V P P P+ H PAA SAP +VA
Sbjct: 58 MVRDDQEPTVARPAAPSAVVVVVAP----PLPPPLPIHRVPAAAVQPSAP--PVVADDVA 111
Query: 460 EIAYPKYEYNYSVADGHSGDN 522
+AY YE G GD+
Sbjct: 112 LLAY-AYEKKKKKRRGSDGDS 131
>02_01_0701 +
5238179-5238461,5238540-5238949,5240413-5240793,
5241112-5241244,5241495-5241622,5241714-5241914
Length = 511
Score = 35.1 bits (77), Expect = 0.063
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +1
Query: 253 SSAESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 432
++A + ++ N + PQ + AP ++ AP P + A+ AA + AP
Sbjct: 14 AAAATTATANSMPLAPPQPPSSGAPFSQPPSTAGTVKTEAPPPPSTSASSAASAAAPAPA 73
Query: 433 AKIVAHQAEE----IAYPKYEYNYSVADGHSGDNKSQQEVRDGDAVKGSYS 573
A A AEE I P Y +S H + + E +G+A S S
Sbjct: 74 AAAAAAAAEESPCTITIPSYSAWFSYDSIHETERRLMPEFFEGEAAAASGS 124
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 35.1 bits (77), Expect = 0.063
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 301 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKY 480
P T + AP+ L V H +T + P AV+ H P +AH+ + I++P
Sbjct: 919 PST-QHVAPMNNLLSRATVHQHTQSYALT--SDPVAVAVHHQPAVNKLAHEVQSISHPAV 975
Query: 481 EYNYSVADGHS 513
++ SVA+ H+
Sbjct: 976 SHS-SVAESHA 985
>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
Length = 495
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = -1
Query: 247 GLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQL 68
G+EQH QG+ G QG+R ++P++H H + R P+ + PVP +
Sbjct: 422 GIEQH---QGKLGVDQGKRPAPEKPRQHWPHVDQLAPLADGSRSTPESRVADPVPITETS 478
Query: 67 GTTPQMRTVLLIWKT 23
+ ++ L W T
Sbjct: 479 PRHSRRASLSLKWTT 493
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 330 YGSSVIDSLGLIMTDDVLGRDGLSRRIVD 244
Y S++++ LGL +D VL DG SRR V+
Sbjct: 275 YYSNLVNGLGLFTSDQVLYTDGASRRTVE 303
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = -1
Query: 253 NSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGD 74
+SG+ +LQG GKPQ QRG+ + H G R G + P ++ S P P
Sbjct: 274 HSGVASGYSLQG--GKPQQQRGEFGRLRFLPRHAGVARRRRRRGGRSPFRLVS-PSHPPP 330
Query: 73 QLGTTPQMRTVLL 35
T P M T+ L
Sbjct: 331 LSKTEPMMDTLEL 343
>03_06_0474 -
34184002-34184660,34184755-34184887,34185071-34185886,
34186013-34186104,34186710-34186863
Length = 617
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 508 HSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAHNGFNGCRHNTGPTGAP 675
H K++ K SY++ GS T Y + H FN +H+T P P
Sbjct: 127 HLDTAKAETSFSSSRRSKFSYNWKSLHGSSTTSSYGSPCHPMFNLSKHSTNPKPPP 182
>02_05_0092 + 25749070-25750638
Length = 522
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 256 SAESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYH 393
SA + S Q+ H +P ++ AAP+ V P T APAPV H
Sbjct: 370 SAPAASEQH---HQEPAMVDTAAPMDIHNVQEPDTAAPAPAPVVEH 412
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 295 DQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS-APVAKIVAHQAEEIAY 471
DQP + AP + A P + PAP ++PA Y+S P A VA Q A
Sbjct: 59 DQPPSAPSYAPPPQYAGYAPPYNNPNPAPYPPESSPAPAPYYSYPPTAAGVATQHAPAAE 118
Query: 472 P 474
P
Sbjct: 119 P 119
>05_07_0125 + 27861368-27862282
Length = 304
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -1
Query: 592 SRQLRGRSMSPSLRHRRG 539
SR+ GRS SPS RHRRG
Sbjct: 189 SRRSHGRSRSPSPRHRRG 206
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 610 YTADAHNGFNGCRHNTGPTGAPTHIKAVPALHLVPEFGTRVIDRP 744
Y+ A+ GF H+ GP+GAPT+ A+ +F + V RP
Sbjct: 371 YSGTANTGF---AHHAGPSGAPTYFNQPSAIVPTFDFYSGVAMRP 412
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 370 APAPVTYHAAPAAVSYHSAPVAKIVAH-QAEEIAYPKYEYNYSVADGHSGDNKSQQEVRD 546
+P+P A+ AAV+ H+AP + H + IA P + + G +G+ S+ EV D
Sbjct: 132 SPSPAPSPASSAAVAEHAAPPRRGEEHARPRSIALPP-----ASSSGDAGET-SRPEVTD 185
Query: 547 GDAVK 561
G A +
Sbjct: 186 GSATR 190
>12_02_0441 + 19115990-19116478
Length = 162
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +1
Query: 280 NIIRHDQPQTINYAAPVAKLAV---ATPVTYHAAPAPVTYHAAPAAVSYHSAPVA 435
N+ D + Y P+ V +H P PV Y A SY+ APVA
Sbjct: 40 NVCLRDLAGVLGYRCPLCNFTVHRQGCRRPHHHHPPPVAYTQHQRASSYNQAPVA 94
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 241 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 140
E H L G HG P +R + Q RH+E H
Sbjct: 275 EFHKLLNGNHGDPTDRRQRAQMNGRHDEDINHAH 308
>02_05_0174 - 26486955-26487728
Length = 257
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Frame = +1
Query: 319 AAPVAKLAVATPVTYHAAPAPV--------TYHAA---PAAVSYHSAPVAKIVAHQAEEI 465
AAP LA A PVT AP P ++ AA PA +HS P+ +VA A
Sbjct: 6 AAPALSLAEAAPVTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLTAVVAAAAAAA 65
Query: 466 A 468
A
Sbjct: 66 A 66
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -1
Query: 277 GKRRTQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHR 152
G+R+ ++ N G E++G +G+ + +G++ K ++ + E R
Sbjct: 432 GERKEEEKNEGEEENGEEEGKEKELKGRKDKEKKEKGGREER 473
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 316 YAAPVAKLAVATPVTYHA-APAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 468
Y APV+ ++ PV + AP PV+Y++ P+ + A+ + A ++
Sbjct: 580 YYAPVSASGISIPVDATSIAPVPVSYYSYPSVTMAATGEAAEPSGYYAASVS 631
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 325 PVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 444
P + A TP PAP +A +A S S P K+V
Sbjct: 30 PPSTAAPPTPTAVRCTPAPAAAPSAASAASARSIPPPKLV 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.128 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,669,703
Number of Sequences: 37544
Number of extensions: 379938
Number of successful extensions: 1475
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -