Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5187
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 30 1.6
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 30 2.1
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 29 3.7
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 3.7
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 29 3.7
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 29 3.7
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 29 3.7
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 3.7
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 28 8.5
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 28 8.5
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 28 8.5
AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 28 8.5
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 28 8.5
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +1
Query: 268 VSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSY------HSAP 429
V+ +I + QP Y APVA +A PAP+ H AP ++ H AP
Sbjct: 359 VAPAHITQEIQPAPQPYVAPVAPVAQEIHTIQPIQPAPI--HPAPLQPAHVVQETAHVAP 416
Query: 430 VAKIVAHQ 453
K+VA +
Sbjct: 417 ETKVVAEE 424
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -1
Query: 304 GADHDG*CSGKRRTQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 137
G G CSG R + + G HG+ G G G G HRG RHG
Sbjct: 287 GHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGS-------GHHRGGRHG 335
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -1
Query: 220 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 131
G HG P + P RH H HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 391 HAAPAAVSYHSAPVAKIVAHQAEEIAY--PKYEYNYSVA-DGHSGDNKSQQEVRDGDAVK 561
H P ++S SA + + +E A P +Y VA D G Q + RD D +
Sbjct: 721 HGEPVSLS-SSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDE 779
Query: 562 GSYSFHEADG-SIRTVE-YTADAHNGFNGCRH 651
+YSF + +G S + + ++ D H G RH
Sbjct: 780 VTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRH 811
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 391 HAAPAAVSYHSAPVAKIVAHQAEEIAY--PKYEYNYSVA-DGHSGDNKSQQEVRDGDAVK 561
H P ++S SA + + +E A P +Y VA D G Q + RD D +
Sbjct: 721 HGEPVSLS-SSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDE 779
Query: 562 GSYSFHEADG-SIRTVE-YTADAHNGFNGCRH 651
+YSF + +G S + + ++ D H G RH
Sbjct: 780 VTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRH 811
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 319 AAPVAKLAVATPV--TYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQA 456
+ P A + A P T APA VT AAPAAV+ +A VA A
Sbjct: 192 SGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAA 239
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/105 (24%), Positives = 43/105 (40%)
Frame = +1
Query: 253 SSAESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 432
S+ S SSQ+ + Q NY + + ++ T P PV + + SYH+
Sbjct: 578 SAYNSQSSQHQTKSIPVQ--NYQSSNYNKSYSSQTTTQHQPQPVAANNN-YSTSYHTERS 634
Query: 433 AKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDAVKGS 567
+ A Q + IA P + N S + HS G ++K +
Sbjct: 635 STTTAQQPQTIALPPPQNNSSHTETHSSTGPIMMHSPGGHSMKST 679
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 391 HAAPAAVSYHSAPVAKIVAHQAEEIAY--PKYEYNYSVA-DGHSGDNKSQQEVRDGDAVK 561
H P ++S SA + + +E A P +Y VA D G Q + RD D +
Sbjct: 721 HGEPVSLS-SSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDE 779
Query: 562 GSYSFHEADG-SIRTVE-YTADAHNGFNGCRH 651
+YSF + +G S + + ++ D H G RH
Sbjct: 780 VTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRH 811
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 391 HAAPAAVSYHSAPVAKIVAHQAEEIAY--PKYEYNYSVA-DGHSGDNKSQQEVRDGDAVK 561
H P ++S SA + + +E A P +Y VA D G Q + RD D +
Sbjct: 721 HGEPVSLS-SSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDE 779
Query: 562 GSYSFHEADG-SIRTVE-YTADAHNGFNGCRH 651
+YSF + +G S + + ++ D H G RH
Sbjct: 780 VTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRH 811
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 364 HAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQ 531
+AAPAP + A PA + SAP IVA + A P ++ + V D +G ++S+
Sbjct: 80 YAAPAP--FAAQPAQFAVQSAPPQPIVAPPPQAYAAP-HKRHVDVMDIDTGVDQSE 132
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 322 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 471
APV + VA P AA PAP AAPAA + +AP A ++++ AY
Sbjct: 108 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 159
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 322 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 471
APV + VA P AA PAP AAPAA + +AP A ++++ AY
Sbjct: 436 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 487
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 28.7 bits (61), Expect = 4.8
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Frame = +1
Query: 307 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQ--AEEI--AYP 474
T N A+ VA+ AV TP APAP A S AP A + A E A P
Sbjct: 250 TANAASAVAEPAVETP-----APAPAAEETPAPATSSEEAPAPAPTAEETPAPETVSAAP 304
Query: 475 KYEYNYSVADGHSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAH 627
+ +Y A G + + DA + S AD + V+ ++ H
Sbjct: 305 EAANSYDSAGGDAATAPAPSS-EAADAAAPTDSAASADTTAALVDTSSSEH 354
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +1
Query: 322 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 468
APV A A Y APAPV A A +Y APVA + A +A
Sbjct: 83 APVVAAAPALAPAY--APAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 295 DQPQTINYAAPVAK---LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 465
DQ ++IN A P A A P T A P + + AA ++V+HQA
Sbjct: 355 DQKKSINSANPFANDVASAAPAPATSAAQPDLLDMFQSSAAPLLQCNRKLQMVSHQAAPF 414
Query: 466 AYP 474
YP
Sbjct: 415 GYP 417
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +1
Query: 322 APVAKLAVATPVTYHAAP----APVTYHAAPAA 408
AP A++A TPV AP AP T AAPAA
Sbjct: 256 APAAEVAPETPVAAPMAPAAPAAPATPEAAPAA 288
>AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 390
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 307 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 477
T+ P + +V V +APAP+++ AA AA ++ + K A + A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 307 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 477
T+ P + +V V +APAP+++ AA AA ++ + K A + A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.128 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,804,930
Number of Sequences: 27780
Number of extensions: 290255
Number of successful extensions: 1032
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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