Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5187
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.5  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 731 TLVPNSGTRWRAGTA 687
           T+VPNSG  ++AG+A
Sbjct: 21  TVVPNSGELFKAGSA 35


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 262 ESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS 423
           + V+ ++ I       I  A  V K  +   V       P+T   +PAAVSY S
Sbjct: 65  KGVTYKHTIIEMDSNPIKTALSVCKSLIERQVYAVVVSHPLTGDLSPAAVSYTS 118


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 668 PVGPVL*RQPLKPLCASAVYSTVLMEPSASWKEYEPFTASP 546
           P+GP+  R+PL       V +  ++  S   + YE F   P
Sbjct: 71  PIGPLRFRKPLPIEPWHGVLNATVLPNSCYQERYEYFPGFP 111


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 668 PVGPVL*RQPLKPLCASAVYSTVLMEPSASWKEYEPFTASP 546
           P+GP+  R+PL       V +  ++  S   + YE F   P
Sbjct: 71  PIGPLRFRKPLPIEPWHGVLNATVLPNSCYQERYEYFPGFP 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.128    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,376
Number of Sequences: 438
Number of extensions: 3415
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)