Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5186
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        28   0.064
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        28   0.064
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        28   0.064
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 0.064
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 537 THELATKPNPA-FRHFCPDDTRAP 605
           T  + T  NPA +R+FCPD ++ P
Sbjct: 270 TAAIPTSENPADYRYFCPDGSKVP 293


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 0.064
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 537 THELATKPNPA-FRHFCPDDTRAP 605
           T  + T  NPA +R+FCPD ++ P
Sbjct: 270 TAAIPTSENPADYRYFCPDGSKVP 293


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 0.064
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 537 THELATKPNPA-FRHFCPDDTRAP 605
           T  + T  NPA +R+FCPD ++ P
Sbjct: 270 TAAIPTSENPADYRYFCPDGSKVP 293


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 319 VPWHWCVYSKSNRPYLH 269
           +P HW VY + N P LH
Sbjct: 33  IPEHWLVYPEPN-PSLH 48


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 256 PFCRSSRNCSYSALR 212
           P+CR + +C YS  R
Sbjct: 9   PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,324
Number of Sequences: 438
Number of extensions: 3486
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)