Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5184
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    29   0.56 
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   6.8  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   9.0  

>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 457 LRPPPQPYSNIVVL*TAPLDYIFLPTLLDGALTSCGDETCFCIFISKTTNTYLISSLK 284
           LRP P+P+S  ++L T      FL            + TCF  F SKT + + IS  K
Sbjct: 8   LRPIPEPFSLTLLLGTRETPVTFLFHYYLYHALKAKESTCFLTF-SKTLDEHAISMRK 64


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 475 FDPVCTLRPPPQPYSNIVVL*TAPLDYI 392
           FDP C    PP P + ++ L +   +Y+
Sbjct: 261 FDPDCAYAFPPYPVTKLIKLASTGYEYV 288


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 439 PYSNIVVL*TAPLDYIFLPTLLDGALTSCGD 347
           PYS +V L   P + +   T   G L SC D
Sbjct: 269 PYSTVVALAWQPFENVLSFTTNQGILYSCPD 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,458
Number of Sequences: 5004
Number of extensions: 34144
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)