Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5184
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164...    28   4.0  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    28   5.2  
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    27   9.1  

>03_01_0208 +
           1642041-1642118,1642200-1642310,1643157-1643318,
           1643433-1643600,1643683-1643843,1643930-1643991,
           1644078-1644127,1644247-1644653,1644760-1644895
          Length = 444

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +3

Query: 285 FKDEIKYV---FVVLDIKIQKQVSSPQEVNAPSSKVGRKI*SRGAVQSTTMLE*GWGGGR 455
           FK ++K V    + +D K+ K VS+   +  P +++G  I     ++ T +   G G G+
Sbjct: 131 FKADVKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDI----VIEGTGVFVDGPGAGK 186

Query: 456 NVQTGSKHAATRQP 497
           ++Q G+K      P
Sbjct: 187 HIQAGAKKVIITAP 200


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
 Frame = +3

Query: 237 LQTDYR*FNEQYCLF----IFKDEIKYVFVVLDIKIQKQVSSPQEVNAPSSKVGRKI*SR 404
           ++T+ R    ++CLF    +FK   K  F+    +  K+V   +     SSK+G K    
Sbjct: 602 IRTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKN----SSKLGMK---P 654

Query: 405 GAVQSTTMLE*GWGGGRNVQTGSKHAATRQPRHRLAS 515
           G+   TT +  G  G RN  T S+    + P+H  AS
Sbjct: 655 GSKPGTTAVRAGTQG-RNPDTSSRGRDQKNPKHHHAS 690


>11_05_0033 +
           18500092-18501372,18502419-18502826,18502948-18502990,
           18503236-18503282,18504582-18505901
          Length = 1032

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 200 VMFISILMVKGYYFNRLF*QNFIFCYF 120
           VMF+ + M+ GYY  R F +  +  YF
Sbjct: 426 VMFLPLPMISGYYAARFFTKKSLSSYF 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,994
Number of Sequences: 37544
Number of extensions: 229238
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)