Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5181
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.11
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.0
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 28 1.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 1.8
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 4.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 7.2
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 9.5
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 9.5
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.5
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 429 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRQGSSAPTLPRGE 602
S P S+ + + L+R +P+ ++AP LPS +A P+P ++ P
Sbjct: 993 SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048
Query: 603 TRAIPRRS*GARTAALP 653
T +P+ S GA +A P
Sbjct: 1049 TPPVPKSSSGAPSAPPP 1065
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 426 GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTL 590
GS PR S A+ ++ S ++ S + P Q + PALPSR LP + S P++
Sbjct: 77 GSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSRGTPSLPSRPGSRPSV 132
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 257 TSPRPSPSSKASLYLTPSTDP 319
TSP+PSPS S+ TP +P
Sbjct: 469 TSPQPSPSLSTSIMSTPKLNP 489
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 519 ARAPALPSREARPLPRQGSSAPTLPRGETRAIP 617
A + A+P EA+P P S+A P E+ +P
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVP 348
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 435 PRSR-AIPSRKEGALSRTRTS*QALPRQGARAPALPSR-EARPLPR--QGSSAP 584
PR R A P + A +R+ ++ ALP + P PSR + P P QG S+P
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 349 YPVKVAVPQPYEVVKHVPYHVKEYVKV 429
Y +K+ VP P+ ++H P HV Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 82 QLCFLSSSSHWQPLLLPAGKLSRA 11
++ L WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 435 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPT 587
PRS R+ LS +R A+ A PA+P R A LP G+++ T
Sbjct: 366 PRSAPSTGRQPPPLSSSR----AVSNPPAPPPAIPGRSAPALPPLGNASRT 412
Score = 26.6 bits (56), Expect = 3.1
Identities = 26/97 (26%), Positives = 40/97 (41%)
Frame = +3
Query: 327 PS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QAL 506
P +RA+S + P + GR A+ G SR + +P+ S ++ +L
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGN--ASRTSTPPVPTPP----SLPPSAPPSL 431
Query: 507 PRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 617
P + + + A PLP AP LP G A P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 319 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 426
+ YPV + P V V Q YEV V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 405 SREGVR*GSRPRSRAIPSRKEGALSRTRT-S*QALPRQGARAPALPSREARPLPRQGSSA 581
S + +R GS RSR+ PS + G R+ + S ++P A +P PR+
Sbjct: 335 SSQSLRLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERD 393
Query: 582 PTLPRGETRAIPR 620
PT+P + R
Sbjct: 394 PTIPPDSIKVYSR 406
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Frame = +1
Query: 292 PVPYAVDRPVP----YPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVP 432
P PY PV P++ H PYP P PY+ + P
Sbjct: 190 PPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRATSP 240
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 133 GYGIDGLDVGYIG--HGQGLGGAYNYVDGGYSSGYG 234
G G D + + + HG+GL YN++ +SG G
Sbjct: 278 GIGCDNMTICIVAFLHGRGLEDWYNWITQRVNSGEG 313
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 522 RAPALPSREARPLPRQGSSAPTLPRGET 605
RA A+PS++A P ++ P PR ++
Sbjct: 12 RAHAVPSQDATTTPDNANNVPKEPRAQS 39
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 256 DVTKTITLVKGVPVPYAVDRP 318
DV K T+V G PYA DRP
Sbjct: 523 DVVKA-TIVNGPAAPYAEDRP 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,042
Number of Sequences: 5004
Number of extensions: 46099
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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