Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5178
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313...    30   1.4  
11_06_0117 + 20302795-20304816                                         29   1.9  
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153...    27   7.7  

>10_07_0117 +
           13028336-13028404,13029073-13029174,13031108-13031367,
           13031813-13031882,13031935-13031966,13032736-13032823,
           13033431-13033742,13033822-13033896,13034018-13034559,
           13034936-13035044,13035713-13035892,13036243-13036404
          Length = 666

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 550 TIGRIGYRAPPRVFLMVVGPLVTRTGRYHRPAYFCREAVM 431
           ++ R G +APP +F+M+   L+ R+ RY   A F    ++
Sbjct: 517 SVSRAGLKAPPNLFVMMT-TLLARSNRYPEIALFVSNKIL 555


>11_06_0117 + 20302795-20304816
          Length = 673

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 214 HIQIKTSSLIHIDYRPLFFLLLRCVDELTAHLMS 315
           H+Q   + ++++DY PL F  +  V  +T+ L+S
Sbjct: 86  HLQSNLTGVVYVDYSPLEFNAVALVGRITSSLLS 119


>08_01_0181 +
           1530623-1531626,1531723-1531902,1531998-1532177,
           1532363-1532442,1532528-1532701,1533001-1533118,
           1533223-1533301
          Length = 604

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 409 PYPSNRNSSLLHDRNRRGGDTYPCGSQEALP 501
           PYP      +L D N  GG  YP G ++A P
Sbjct: 163 PYPLRGGQHVLDDNNFGGGYYYPAG-EDAFP 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,471
Number of Sequences: 37544
Number of extensions: 294602
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)