Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5176
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.3  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   8.3  

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 394 SKFLREYDTIETPVESLLALLLHHIV 471
           ++F+  YDT++  VE ++    HH++
Sbjct: 261 AQFMEVYDTVKAEVEKMVTPEQHHLI 286


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 151  PRYQRSFRKIKYNTGSRGDTPMVWV 77
            PRY +  R++  NT  + DT   W+
Sbjct: 3495 PRYSKIVRQLLINTSLKKDTKEYWL 3519


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 27  CAVKMRPLMPTVAPTHCTHTIGVSPLLP 110
           C  K +PL+ T    + +HTIG   ++P
Sbjct: 467 CIDKQKPLLTTQRTRNRSHTIGNQAVVP 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,619
Number of Sequences: 5004
Number of extensions: 30046
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)