Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5176
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   5.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 56  YRCAHTLHPHHRCVASASCIVF 121
           Y  AH  HP HR     + +VF
Sbjct: 165 YFTAHVTHPRHRLCVFVAGVVF 186


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 477 GSNDVVQKQS*QRFYRSLYCIVLP 406
           G NDVVQ QS         CI  P
Sbjct: 176 GVNDVVQHQSGSEAEAEFVCIATP 199


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 349 IVQITLCTKYNSISNTRNKF 290
           +++ T C K N+ +N +NK+
Sbjct: 411 LIKNTRCAKSNNQNNNQNKY 430


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 61  LRPHTAPTP*VCRLC 105
           LR HT   P  C LC
Sbjct: 57  LRVHTGERPYACELC 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 61  LRPHTAPTP*VCRLC 105
           +R HT   P VC+ C
Sbjct: 195 MRTHTGEKPYVCKAC 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,922
Number of Sequences: 438
Number of extensions: 2283
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)