Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5174
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 34 0.099
09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718 32 0.40
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 31 1.2
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 30 1.6
01_05_0266 + 20209005-20209137,20209606-20210183 30 2.1
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 2.8
03_05_0867 - 28381891-28383018 29 2.8
09_04_0292 - 16436918-16439233 29 3.7
11_06_0610 - 25449085-25453284 29 4.9
05_01_0214 - 1615519-1616775 29 4.9
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 29 4.9
08_02_0707 - 20212190-20214592 28 6.5
02_01_0302 - 2021221-2023305 28 6.5
12_02_0643 - 21461123-21461902 28 8.6
10_01_0274 - 2901033-2901778,2902475-2902634 28 8.6
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 28 8.6
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 28 8.6
04_04_1125 + 31085106-31085714 28 8.6
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 34.3 bits (75), Expect = 0.099
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 69 EENPLIKLLHKHMSTYTVPPARTGHATPTPEWARPPSTPSDP 194
+ +P+ + + Y P A++G P P WA PPS S+P
Sbjct: 437 QSHPINQEYIRQNRNYVAPWAQSGQYYPAPPWAAPPSVNSNP 478
>09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718
Length = 187
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 75 NPLIKLLHKHMSTYTVPPARTGHATPTPEWARPPSTP-SDPS 197
NP + L + + P A T A TP+W RP + P +DPS
Sbjct: 16 NPSLPLPRRARRPHPPPAANTTGAASTPDWFRPRAPPDADPS 57
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 123 PPARTGHATPTPEWARPPSTPSDPSEGDPI 212
P A A PE A P S P DP G P+
Sbjct: 285 PRASAASARSWPEMAAPSSAPGDPGRGPPV 314
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 114 YTVPPARTGHATPTPEWARPPSTPSDP-SEGDP 209
+T PP+ + P+P+++ PSTP+ P G P
Sbjct: 38 WTPPPSTASPSPPSPDFSSDPSTPATPVDNGGP 70
>01_05_0266 + 20209005-20209137,20209606-20210183
Length = 236
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 56 GTMRRGKSLDQASA*AYEHLHSPACAHWTRNSYSGMGASTFNS 184
G+ RG++ + A A LHS A R G+GA+TF S
Sbjct: 135 GSAGRGRASGRGGAEASSALHSLAARFAGRGGMGGLGATTFGS 177
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 89 ASA*AYEHLHSPACAHWTRNSYSGMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNHREA 268
A++ + + H+ A AH + +G S R + DSYH HH +DN R A
Sbjct: 357 AASSSVQPFHAEAAAHLRHPRHVSVGGSGSARSRRM---RDSYHGFHHLMIEDNNLGRSA 413
>03_05_0867 - 28381891-28383018
Length = 375
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 75 NPLIKLLHKHMSTYTVPPARTGHATPTPEWAR-PPSTPSDPSEGDP 209
+P LL H + PPA A P R PP PS PS DP
Sbjct: 24 DPTAPLL-PHADDPSAPPAAAAAARKLPVKRRSPPPRPSSPSSSDP 68
>09_04_0292 - 16436918-16439233
Length = 771
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 565 LLVKLF*V*WYKAELRLVKKVVIFLIW 645
++ LF + +YKA+LR+ KV +F++W
Sbjct: 128 IIYLLFLILYYKAQLRMNLKVPLFILW 154
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 123 PPARTGHATPTPEWARPPSTPSDPS 197
PPA GH TP+P + PPS S P+
Sbjct: 630 PPAPEGH-TPSPPESTPPSEKSPPT 653
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 209 DSYHNHHHRETDDNKNHREANYYHNESTPWHH 304
D H H H D + N N +H+ T HH
Sbjct: 214 DQEHGHVHHHEDGHGNSITVNLHHHPGTGHHH 245
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 107 EHLHSPACAHWTRNSYSGMGAST 175
+H HS AHW R+ SG G T
Sbjct: 450 KHTHSNGDAHWRRSKESGTGTGT 472
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 104 YEHLHSPACAHWTRNSYSGMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNHREANYYHN 283
+ H H +C+H +S+S + + +S + G D +HNH H N N ++ +
Sbjct: 488 HHHAHGGSCSHSHSHSHSHSHSHS-HSHSHVHGHED-HHNHDHALQGVNHNGACCEHHGD 545
Query: 284 ESTPWHH 304
+ HH
Sbjct: 546 ANKSHHH 552
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 96 HKHMSTYTVPPARTGHATPTPEWARPPSTPSDPSEG 203
H H ST P + H PTP PPS S G
Sbjct: 621 HSHPSTPPSPSGPSFHPPPTPHNCSPPSHGSSTGGG 656
>12_02_0643 - 21461123-21461902
Length = 259
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 126 PARTGHATPTPEWARPPSTPSDPSEGDP 209
P R TP P RPP+TP P G P
Sbjct: 214 PLRGRPRTPPPPRPRPPTTPPRPYVGCP 241
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 123 PPARTGHATPTPEWARPPSTPSDPSEGDP 209
PPA G+ P PE PP TP+ P G P
Sbjct: 206 PPADPGYGQPAPE-CPPPPTPA-PECGQP 232
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 218 HNHHHRETDDNKNHREANYYHNESTPWH 301
HNH+H ++ H N+ HN + H
Sbjct: 49 HNHNHNHNHNHNIHNSHNHNHNHNAAPH 76
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 123 PPARTGHATPTPEWARPPSTPSDPSEGDPI 212
PP + PTP RPPS P + P+
Sbjct: 64 PPPASPPPAPTPPQTRPPSPPPQQQQPRPV 93
>04_04_1125 + 31085106-31085714
Length = 202
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +3
Query: 114 YTVPPARTGHATPTPEW----ARPPSTPSDPS 197
+T PPA TPTP W A PP TP+ P+
Sbjct: 63 WTPPPATPTPPTPTP-WTPTPATPPPTPATPA 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,978,255
Number of Sequences: 37544
Number of extensions: 359579
Number of successful extensions: 1437
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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