Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5173
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    45   7e-06
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.7  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.7  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.2  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.1  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.1  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = -1

Query: 371 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVL 195
           +Q  R   P+ LA+A++I+K+QGQT+    +DL    F  GQ YVA SR      L VL
Sbjct: 704 VQASRSQIPLILAYAISIHKAQGQTLDRVKVDLGR-VFEKGQAYVALSRATTQEGLQVL 761


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 166 TIFFVSPSLANTNKLDGLPTREHATYNCP 252
           T  FV P L+    L+ LPT E  T+NCP
Sbjct: 711 TAVFVKPDLS----LEKLPTLEINTFNCP 735


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 362 KRIPFPITLAFAMTINKSQGQTM--SVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAK 189
           + + + I+L  ++T+NK QG ++  +V GL+  T     G  YV+      PS+L +   
Sbjct: 169 RSVTYSISL--SLTMNKHQGHSLLQTVSGLNYHTLSVGTGLSYVSLIIFDLPSNLLMTRA 226

Query: 188 D 186
           D
Sbjct: 227 D 227


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -2

Query: 400 EYLLYPQMCQFNLSVFH--FRLHWHLQ*LLINPKAKQC 293
           E +L      F  S++H  F  HW +  LLINP    C
Sbjct: 530 ELILKFMQRNFENSLYHQSFSSHWFISRLLINPIRMLC 567


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -1

Query: 479 IKKIMKKVNEGTI-LNGKFRGENILIPRIPIIPTDVP-----IQFKRIPFPITLAFAMTI 318
           I+ ++K +  G + + GK +   ++ P  P  P+ +P     IQF R P P+        
Sbjct: 433 IQILLKPIYPGQLHMLGK-QLHTVIYPIFPSSPSSLPLLSELIQFSRRPSPVQTGMVCAA 491

Query: 317 NKSQGQTMSVC 285
           N       +VC
Sbjct: 492 NDDDEFAQTVC 502


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 245 LYVACSRVGKPSSLFVLAKDGLTKN 171
           L +A S++GK +S F+   DG+T N
Sbjct: 812 LTIAVSKIGKNASGFLYLDDGVTFN 836


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,842
Number of Sequences: 5004
Number of extensions: 50388
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)